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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Potri.012G040700.1 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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| Family |
BBR-BPC |
| Protein Properties |
Length: 285aa MW: 31426 Da PI: 9.7253 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.012G040700.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 308.6 | 2.1e-94 | 1 | 284 | 1 | 301 |
GAGA_bind 1 mdddgsre.rnkgyyepaaslkenlglqlms.siaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllven 89
md+d+s + rn+gyyep+ ++k nlglqlm+ +++e+ + + +++ ++ +++rd+ q+ +++ +a +++++k+ ++ + ++
Potri.012G040700.1 1 MDEDNSLNiRNWGYYEPT-TVKGNLGLQLMApTMPEKPFSGSRSAAIMTSMNGGFNHRDIGVSQHMFPMEHMRDASIDKREKFHNVFTGNH 90
99***************9.9**********746779987776666669999***********99999999999999999999999888666 PP
GAGA_bind 90 slasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkk 180
+ v ++t+s++++q+ ++++ + e+l ++e a ++ke+ kk+qr+k k kakk k+ ++++k + ++
Potri.012G040700.1 91 D-------YDVVFPETSSANHMQM-----FQPPNSA--NDETL--DQVEGAGVVEKENGPDKKKQRPKALKCLKAKKGKRGPQVPKPDGSP 165
5.......66789***********.....3333332..34434..4566777888999999999****************99888777777 PP
GAGA_bind 181 esaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLek 271
+ ++ k++kk++++ +ng+s+D+s +P+PvCsCtG+++qCY+WG+GGWqSaCCtt iSv+PLP+s krrgaRiagrKmS gafkk+Lek
Potri.012G040700.1 166 SA--QQGKSSKKTVEIMINGISMDISLFPIPVCSCTGTPQQCYRWGCGGWQSACCTTCISVHPLPMSMKRRGARIAGRKMSLGAFKKVLEK 254
66..679************************************************************************************ PP
GAGA_bind 272 LaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
La+eGyd+sn++DL++hWAkHGtnkfvti+
Potri.012G040700.1 255 LAGEGYDFSNAIDLRTHWAKHGTNKFVTIK 284
*****************************8 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 285 aa
Download sequence Send
to blast |
MDEDNSLNIR NWGYYEPTTV KGNLGLQLMA PTMPEKPFSG SRSAAIMTSM NGGFNHRDIG 60
VSQHMFPMEH MRDASIDKRE KFHNVFTGNH DYDVVFPETS SANHMQMFQP PNSANDETLD 120
QVEGAGVVEK ENGPDKKKQR PKALKCLKAK KGKRGPQVPK PDGSPSAQQG KSSKKTVEIM 180
INGISMDISL FPIPVCSCTG TPQQCYRWGC GGWQSACCTT CISVHPLPMS MKRRGARIAG 240
RKMSLGAFKK VLEKLAGEGY DFSNAIDLRT HWAKHGTNKF VTIK*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Early detected in the floral meristem and floral organ primordia. At later stages, expressed in all floral organs and in particular in the ovule. {ECO:0000269|PubMed:15722463}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in leaf and sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in the whole ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | FJ982272 | 0.0 | FJ982272.1 Populus trichocarpa GAGA-binding transcriptional activator (BBR/BPC11) gene, complete cds. |
| GenBank | FJ982273 | 0.0 | FJ982273.1 Populus trichocarpa GAGA-binding transcriptional activator (BBR/BPC11) mRNA, complete cds. |
