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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Potri.012G040600.1 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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| Family |
BBR-BPC |
| Protein Properties |
Length: 291aa MW: 32583.3 Da PI: 9.5379 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.012G040600.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 321.9 | 1.9e-98 | 7 | 290 | 1 | 301 |
GAGA_bind 1 mdddgsre.rnkgyyepaaslkenlglqlms.siaerdakirernlalsekkaavaerd.........maflqrdkalaernkalverdnk 80
md+d+s + rn+gyyep+ s+k nlglql+s ++ae+ +n+ +++ ++ +++rd m++ +rd ++ + ++k
Potri.012G040600.1 7 MDEDNSLNiRNWGYYEPT-SVKGNLGLQLLSpTMAEKPFLGARSNAIMTNVNGGFHHRDigvsqpmfpMEY-MRDVWIGH--------REK 87
99***************9.***********84677888877888888************************.9*****99........789 PP
GAGA_bind 81 llalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkks 171
ll++l+ +++ + l++t s++++q ++++ e + e+l ++ee+ ++ke+ +kkrqra+ pk++kakk ++ +
Potri.012G040600.1 88 LLSMLPENHN-------YEALLPETASTHHVQV-----FQPPDSE--NDEML--DQVEESGFVEKENGPNKKRQRANAPKSPKAKKGTRAP 162
******8887.......77899*******9999.....4444444..33433..55678888999999999******************99 PP
GAGA_bind 172 ekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSq 262
+++k + +++ +r+++ kk+ ++ +ng+++D s +P+PvCsCtG ++q Y+WG+GGWqSaCCtt iS+yPLP+stkrrgaRiagrKmS+
Potri.012G040600.1 163 RVPKPEGSPSV--QRVRTAKKTAEIMINGINMDMSVIPIPVCSCTGNPQQSYRWGCGGWQSACCTTCISMYPLPMSTKRRGARIAGRKMSS 251
99987777777..79**************************************************************************** PP
GAGA_bind 263 gafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
gafkk+LekLa+eGyd+snp+DL++hWAkHGtnkfvtir
Potri.012G040600.1 252 GAFKKVLEKLADEGYDFSNPIDLRTHWAKHGTNKFVTIR 290
**************************************8 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 291 aa
Download sequence Send
to blast |
MVKFEIMDED NSLNIRNWGY YEPTSVKGNL GLQLLSPTMA EKPFLGARSN AIMTNVNGGF 60
HHRDIGVSQP MFPMEYMRDV WIGHREKLLS MLPENHNYEA LLPETASTHH VQVFQPPDSE 120
NDEMLDQVEE SGFVEKENGP NKKRQRANAP KSPKAKKGTR APRVPKPEGS PSVQRVRTAK 180
KTAEIMINGI NMDMSVIPIP VCSCTGNPQQ SYRWGCGGWQ SACCTTCISM YPLPMSTKRR 240
GARIAGRKMS SGAFKKVLEK LADEGYDFSN PIDLRTHWAK HGTNKFVTIR *
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Early detected in the floral meristem and floral organ primordia. At later stages, expressed in all floral organs and in particular in the ovule. {ECO:0000269|PubMed:15722463}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in leaf and sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in the whole ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | FJ982270 | 0.0 | FJ982270.1 Populus trichocarpa GAGA-binding transcriptional activator (BBR/BPC10) gene, complete cds. |
| GenBank | FJ982271 | 0.0 | FJ982271.1 Populus trichocarpa GAGA-binding transcriptional activator (BBR/BPC10) mRNA, complete cds. |
