PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.012G040500.1

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

BBR-BPC

Protein Properties

Length: 303aa MW: 33744.1 Da PI: 10.3933

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.012G040500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	226	3.2e-69	41	302	8	301
GAGA_bind 8 e.rnkgyyepaaslkenlglqlms.siaerdakirernlalsekkaavaerd.........maflqrdkalaernkalverdnkllalllv 87 + rn+gyyep+ s+k n+glqlms +++e+ +++ +++ k+ + +rd m++ +r +++ + ++k+l++l+ Potri.012G040500.1 41 DiRNWGYYEPT-SVKGNVGLQLMSpTMPEKPLLGSRSKTIMKSVKGGFDHRDigvspsmfpMEY-MRGAWIGQ--------REKFLKMLPG 121 56******9.*******94566887766666666999*****999999999999.89999999........789**8 PP GAGA_bind 88 enslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkv 178 +++ + +vl++t+ + ++q+ ++++ + + e+ ++e+a ++k + +kkrq++k k+ kakk k+ ++++k + Potri.012G040500.1 122 NHN-------YAEVLPETSAARHMQM------FQPPYSA-NDET--LDQVEDAGVVEKANGPEKKRQHPKALKSLKAKKGKRGPQVPKPDG 196 886.......88999***9999......3445553.3333..3456678888888889999999999999999999888887777 PP GAGA_bind 179 kkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklL 269 +++ +r ++ kk+ ++ +ng+s+D+s +P+PvCsCtG+++qCY+WG+GGWqS CCtt iSv+PLP+stkrrg+ i grKmS Potri.012G040500.1 197 SPSA--QRGRSAKKTAEIMINGISMDISVFPIPVCSCTGSPQQCYRWGCGGWQSVCCTTCISVHPLPISTKRRGTSIEGRKMS-------- 277 6666..79************************************************************************9........ PP GAGA_bind 270 ekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 y lsn +DL++hWAkHGt+kfvtir Potri.012G040500.1 278 -------YVLSNRIDLRTHWAKHGTDKFVTIR 302 .......889*******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	8.0E-147	33	302	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	1.5E-80	40	302	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MSIGEGHMHR IKWKTLCQPR TEGGLGLRDM QQMNKAFVIL DIRNWGYYEP TSVKGNVGLQ 60 LMSPTMPEKP LLGSRSKTIM KSVKGGFDHR DIGVSPSMFP MEYMRGAWIG QREKFLKMLP 120 GNHNYAEVLP ETSAARHMQM FQPPYSANDE TLDQVEDAGV VEKANGPEKK RQHPKALKSL 180 KAKKGKRGPQ VPKPDGSPSA QRGRSAKKTA EIMINGISMD ISVFPIPVCS CTGSPQQCYR 240 WGCGGWQSVC CTTCISVHPL PISTKRRGTS IEGRKMSYVL SNRIDLRTHW AKHGTDKFVT 300 IR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.012G040500.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024437708.1	1e-162	protein BASIC PENTACYSTEINE2-like
TrEMBL	A0A2K1Y8K0	0.0	A0A2K1Y8K0_POPTR; Uncharacterized protein
STRING	POPTR_0012s03750.1	1e-146	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2370	32	83
Representative plant	OGRP1865	12	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14685.3	9e-68	basic pentacysteine 2

Link Out ? help Back to Top
Phytozome	Potri.012G040500.1