PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.012G040400.1
Common NamePOPTR_0012s03750g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family BBR-BPC
Protein Properties Length: 285aa    MW: 31477.1 Da    PI: 9.844
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.012G040400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind307.93.6e-9412841301
           GAGA_bind   1 mdddgsre.rnkgyyepaaslkenlglqlms.siaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllven 89 
                         md+d+s + rn+gyyep+ ++k nlglqlm+ +++e+      + + +++ ++ +++rd+   ++   +++  +a +++++k+ ++ + ++
  Potri.012G040400.1   1 MDEDNSLNiRNWGYYEPT-TVKGNLGLQLMApTMPEKPFSGSRSAAIMTSMNGGFNHRDIGVSRHMFPMEHMRDASIDKREKFHHVFTGNH 90 
                         99***************9.9**********74677998777666666999*********99988888899999999999***999998777 PP

           GAGA_bind  90 slasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkk 180
                                 +  v ++t+s++++q+     ++++     + e+l   ++e a  ++ke+   kk+qr+k  k  kakk k+ ++++k + ++
  Potri.012G040400.1  91 D-------YDVVFPETSSANHMQM-----FQPPNSA--NDETL--DQVEGAGVVEKENGPDKKKQRPKALKCLKAKKGKRGPQVPKPDGSP 165
                         5.......66789***********.....3333332..34434..4566777888999999999****************99888777777 PP

           GAGA_bind 181 esaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLek 271
                         +   ++ k++kk++++ +ng+s+D+s +P+PvCsCtG+++qCY+WG+GGWqSaCCtt iSv+PLP+s krrgaRiagrKmS gafkk+Lek
  Potri.012G040400.1 166 SA--QQGKSSKKTVEIMINGISMDISLFPIPVCSCTGTPQQCYRWGCGGWQSACCTTCISVHPLPMSMKRRGARIAGRKMSLGAFKKVLEK 254
                         66..679************************************************************************************ PP

           GAGA_bind 272 LaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                         La+eGyd+sn++DL++hWAkHGtnkfvti+
  Potri.012G040400.1 255 LAGEGYDFSNAIDLRTHWAKHGTNKFVTIK 284
                         *****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062171.8E-1061284IPR010409GAGA-binding transcriptional activator
SMARTSM012266.3E-1851284IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MDEDNSLNIR NWGYYEPTTV KGNLGLQLMA PTMPEKPFSG SRSAAIMTSM NGGFNHRDIG  60
VSRHMFPMEH MRDASIDKRE KFHHVFTGNH DYDVVFPETS SANHMQMFQP PNSANDETLD  120
QVEGAGVVEK ENGPDKKKQR PKALKCLKAK KGKRGPQVPK PDGSPSAQQG KSSKKTVEIM  180
INGISMDISL FPIPVCSCTG TPQQCYRWGC GGWQSACCTT CISVHPLPMS MKRRGARIAG  240
RKMSLGAFKK VLEKLAGEGY DFSNAIDLRT HWAKHGTNKF VTIK*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Early detected in the floral meristem and floral organ primordia. At later stages, expressed in all floral organs and in particular in the ovule. {ECO:0000269|PubMed:15722463}.
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in leaf and sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in the whole ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.012G040400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9822720.0FJ982272.1 Populus trichocarpa GAGA-binding transcriptional activator (BBR/BPC11) gene, complete cds.
GenBankFJ9822730.0FJ982273.1 Populus trichocarpa GAGA-binding transcriptional activator (BBR/BPC11) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024437757.10.0protein BASIC PENTACYSTEINE2-like
RefseqXP_024437758.10.0protein BASIC PENTACYSTEINE2-like
SwissprotQ9SKD03e-82BPC1_ARATH; Protein BASIC PENTACYSTEINE1
TrEMBLA0A2K1Y8J80.0A0A2K1Y8J8_POPTR; Uncharacterized protein
STRINGPOPTR_0012s03750.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23703283
Representative plantOGRP18651240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.34e-82basic pentacysteine 2