 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Potri.012G040300.1 |
| Common Name | POPTR_0012s03740g |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 285aa MW: 31805.3 Da PI: 9.546 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.012G040300.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 321.4 | 2.7e-98 | 1 | 284 | 1 | 301 |
GAGA_bind 1 mdddgsre.rnkgyyepaaslkenlglqlms.siaerdakirernlalsekkaavaerd.........maflqrdkalaernkalverdnk 80
md+d+s + rn+gyyep+ s+k nlglql+s ++ae+ +n+ +++ ++ +++rd m++ rd ++ + ++k
Potri.012G040300.1 1 MDEDNSLNiRNWGYYEPT-SVKGNLGLQLLSpTMAEKPFLGARSNAIMTNVNGGFHHRDigvsqpmfpMEY-TRDVWIGH--------REK 81
99***************9.***********84677888877888888************999999999999.99999999........789 PP
GAGA_bind 81 llalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkks 171
ll++l+ +++ + l++t s++++q ++++ e + e+l ++ee+ ++ke+ +kkrqra+ pk++kakk ++ +
Potri.012G040300.1 82 LLSMLPENHN-------YEALLPETASTHHVQV-----FQPPDSE--NDEML--DQVEESGFVEKENGPNKKRQRANAPKSPKAKKGTRAP 156
******8887.......77899*******9999.....4444444..33433..55678888999999999******************99 PP
GAGA_bind 172 ekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSq 262
+++k + +++ +r+++ kk+ ++ +ng+++D s +P+PvCsCtG ++q Y+WG+GGWqSaCCtt iS+yPLP+stkrrgaRiagrKmS+
Potri.012G040300.1 157 RVPKPEGSPSV--QRVRTAKKTAEIMINGINMDMSVIPIPVCSCTGNPQQSYRWGCGGWQSACCTTCISMYPLPMSTKRRGARIAGRKMSS 245
99987777777..79**************************************************************************** PP
GAGA_bind 263 gafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
gafkk+LekLa+eGyd+snp+DL++hWAkHGtnkfvtir
Potri.012G040300.1 246 GAFKKVLEKLADEGYDFSNPIDLRTHWAKHGTNKFVTIR 284
**************************************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 285 aa
Download sequence Send
to blast |
MDEDNSLNIR NWGYYEPTSV KGNLGLQLLS PTMAEKPFLG ARSNAIMTNV NGGFHHRDIG 60
VSQPMFPMEY TRDVWIGHRE KLLSMLPENH NYEALLPETA STHHVQVFQP PDSENDEMLD 120
QVEESGFVEK ENGPNKKRQR ANAPKSPKAK KGTRAPRVPK PEGSPSVQRV RTAKKTAEIM 180
INGINMDMSV IPIPVCSCTG NPQQSYRWGC GGWQSACCTT CISMYPLPMS TKRRGARIAG 240
RKMSSGAFKK VLEKLADEGY DFSNPIDLRT HWAKHGTNKF VTIR*
|
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Early detected in the floral meristem and floral organ primordia. At later stages, expressed in all floral organs and in particular in the ovule. {ECO:0000269|PubMed:15722463}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in leaf and sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in the whole ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | FJ982270 | 0.0 | FJ982270.1 Populus trichocarpa GAGA-binding transcriptional activator (BBR/BPC10) gene, complete cds. |
| GenBank | FJ982271 | 0.0 | FJ982271.1 Populus trichocarpa GAGA-binding transcriptional activator (BBR/BPC10) mRNA, complete cds. |
