PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.012G038100.2

Common Name

POPTR_0012s03510g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NAC

Protein Properties

Length: 242aa MW: 27806 Da PI: 4.5049

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.012G038100.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	176.5	7.3e-55	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppGfrFhPtdeelv++yLk+k++g++++l ++i+e+d+yk+ePwdL k + +++ ewyfF +rd+ky++g r+nrat++gyWk+tgkd Potri.012G038100.2 6 LPPGFRFHPTDEELVNYYLKRKINGQEIDL-DIIPEIDLYKCEPWDLAeKsFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKD 95 79**************************.99**********84335556888***************************** PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++v + +++++g+kktLv+y+grap+g +tdWvmheyrl Potri.012G038100.2 96 RRVNC-QNRAIGMKKTLVYYRGRAPQGIRTDWVMHEYRL 133 *.8999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.58E-64	4	157	IPR003441	NAC domain
PROSITE profile	PS51005	59.963	6	156	IPR003441	NAC domain
Pfam	PF02365	2.6E-30	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MAPVGLPPGF RFHPTDEELV NYYLKRKING QEIDLDIIPE IDLYKCEPWD LAEKSFLPSR 60 DPEWYFFGPR DRKYPNGFRT NRATRAGYWK STGKDRRVNC QNRAIGMKKT LVYYRGRAPQ 120 GIRTDWVMHE YRLDDKECED TSGIQDSYAL CRVFKKNGIC SEIEEQGQCT TSLSLTESSS 180 QGVLNEYETM SPDVPIASSS CIEEEDKDDS WMQFITDDPW YCSSNNAMVG GEEISQVTFT 240 D*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-55	2	157	11	169	Stress-induced transcription factor NAC1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in a few sieve element cells before enucleation and in phloem-pole pericycle cells. {ECO:0000269\|PubMed:25081480}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.012G038100.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002318332.3	0.0	NAC domain-containing protein 86 isoform X3
Swissprot	Q9FFI5	2e-91	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	A0A3N7HAT9	0.0	A0A3N7HAT9_POPTR; Uncharacterized protein
STRING	POPTR_0012s03510.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G17730.1	1e-125	NAC domain containing protein 57

Link Out ? help Back to Top
Phytozome	Potri.012G038100.2
Entrez Gene	7454027

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]