PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.012G032900.1
Common NamePOPTR_0012s01260g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 366aa    MW: 41083.6 Da    PI: 4.7709
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.012G032900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.15.9e-20131180255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         +++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa+ +++a+ kl+g
  Potri.012G032900.1 131 KFRGVRQRP-WGKWAAEIRDPA----RrVRLWLGTYDTAEEAARVYDNAAIKLRG 180
                         89*******.**********82....35*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.3E-30130188IPR001471AP2/ERF domain
SMARTSM003801.0E-39131194IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-21131188IPR016177DNA-binding domain
CDDcd000185.81E-34131187No hitNo description
PROSITE profilePS5103224.329131188IPR001471AP2/ERF domain
PfamPF008473.8E-13131180IPR001471AP2/ERF domain
PRINTSPR003672.0E-10132143IPR001471AP2/ERF domain
PRINTSPR003672.0E-10154170IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MIDQSILCPI KYTEHKKVTK KFTKQPLKPN MVHSDDRCRS PEPSNPAPRL VRVTVTDHDA  60
TDSSSDEEGE LFGRQRVKRY VSEINIQPAA FCKETNVIAT TIAKNRKRSV GDIPQKPAKR  120
LTAQSTTNGR KFRGVRQRPW GKWAAEIRDP ARRVRLWLGT YDTAEEAARV YDNAAIKLRG  180
PDALTNFTTP PSREEDQEEE KSSPVEESEE KKPEINVETV SGSGYESADE SHSLSSPKSV  240
LTFRLPSAES HKPPSQPFQE AKMEPKHQDN EEAFGESNLS DYLPLDSPFL DDFFNFGTSG  300
PTLFDDQVIA TTTTATSIFQ ESIMCDQDFG DIFLDPLQDF TSLPSVCQED DDFFHFLNSE  360
PLTAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-20129187362ATERF1
3gcc_A1e-20129187362ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.012G032900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024437798.10.0ethylene-responsive transcription factor CRF4
TrEMBLA0A2K1Y8600.0A0A2K1Y860_POPTR; Uncharacterized protein
STRINGPOPTR_0012s01260.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.13e-68cytokinin response factor 4