PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.012G031700.1 | ||||||||
Common Name | POPTR_0012s01380g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | WRKY | ||||||||
Protein Properties | Length: 372aa MW: 41359.7 Da PI: 5.6398 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.4 | 8.3e-30 | 133 | 194 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqK + g+++pr+YYrCt++ gC ++k+v+rs+edp+++eitY+g+H+++ Potri.012G031700.1 133 LDDGFSWRKYGQKAILGAKYPRGYYRCTHRnvqGCLATKQVQRSDEDPTIFEITYRGRHTCT 194 59***************************98999**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 23.284 | 128 | 191 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 6.3E-29 | 130 | 195 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.58E-26 | 132 | 195 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.1E-42 | 133 | 195 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.2E-27 | 134 | 193 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0010193 | Biological Process | response to ozone | ||||
GO:0042542 | Biological Process | response to hydrogen peroxide | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 372 aa Download sequence Send to blast |
MANMGDWEQK NLVEELTLGM ELAKQLQIHL NVPSSSRETR EVLVQKILTS YEKALSMLNF 60 GTSLVGELHP VGGITIRNSE SPPSHSGSPR SEDSDRDTRD QRQIDYGSSS RKSMPRWTKQ 120 VRVNPGMGLE GPLDDGFSWR KYGQKAILGA KYPRGYYRCT HRNVQGCLAT KQVQRSDEDP 180 TIFEITYRGR HTCTQASNLL PLTQLRENQG PSTNITIEPQ QNQPDQENNP HTQELLSNFR 240 RGLKVMTEDL DSHDQQSFPT NTFQFPSTST VKPENNSLFP PSMVENSFVG NFSPPFISPS 300 DSVTNYYSVS PNEMQHSFGG NKNFQSSESE LTGIISAAAS TTTSPTVGLD FPSGNVNFDP 360 NFTFDNSGFL S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 2e-20 | 133 | 193 | 8 | 68 | OsWRKY45 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00525 | DAP | Transfer from AT5G24110 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.012G031700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ377447 | 0.0 | GQ377447.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 27 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002318373.1 | 0.0 | probable WRKY transcription factor 30 | ||||
TrEMBL | B9I540 | 0.0 | B9I540_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0012s01380.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF493 | 34 | 157 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24110.1 | 2e-61 | WRKY DNA-binding protein 30 |
Link Out ? help Back to Top | |
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Phytozome | Potri.012G031700.1 |
Entrez Gene | 7485216 |