PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.012G018700.1

Common Name

POPTR_0012s02570g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Dof

Protein Properties

Length: 298aa MW: 32791.1 Da PI: 7.8949

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.012G018700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.6	7.3e-40	33	94	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 k++al+cprC+stntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss Potri.012G018700.1 33 KDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTAGGSLRNVPVGGGSRKNKRSSS 94 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-25	25	82	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.1E-34	34	91	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.301	37	91	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	39	75	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MDTATQWAQG IGAVNPMEGS RPDVLERRAR AQKDQALNCP RCNSTNTKFC YYNNYSLSQP 60 RYFCKTCRRY WTAGGSLRNV PVGGGSRKNK RSSSTASTSA AGAAASKKFP LDLTQPNLPH 120 SASQNPKIHE GQDLNLAYPP SADDYSNLSE FVEIPFDTES NKTHHQNPNP SSTSPSHHHH 180 HHVSPMEFLK STAMNSRGFS AFMSIPPLSD SNNTMFSTGF PLQEFKSTQN FSLEGLESGY 240 SNTQGVHETC GSARLLFPIE DLKQQVPSNT EFEQNTREQR DSAPVGYWNG MLGGGSW*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.012G018700.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB971709	1e-39	AB971709.1 Nicotiana tabacum NtBBF2 mRNA for Dof zinc finger protein, complete cds, cultivar: Samsun NN.
GenBank	AB971712	1e-39	AB971712.1 Nicotiana tabacum NtBBF2 gene for Dof zinc finger protein, partial cds, cultivar: Samsun NN.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002317793.3	0.0	dof zinc finger protein 1
TrEMBL	A0A2K1Y7I6	0.0	A0A2K1Y7I6_POPTR; Uncharacterized protein
STRING	POPTR_0012s02570.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF674	34	137
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.4	7e-40	Dof family protein

Link Out ? help Back to Top
Phytozome	Potri.012G018700.1
Entrez Gene	7496412