PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.012G013500.1 | ||||||||
Common Name | POPTR_0012s02080g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | B3 | ||||||||
Protein Properties | Length: 158aa MW: 17376.6 Da PI: 10.6461 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48.7 | 1.4e-15 | 4 | 94 | 1 | 90 |
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.s 88 f k+l++ dv k rl++p k++++ +g+ + ++ + +desg +W +k++ r+k+ vltkGW Fv ++Lk+gD v F+ ++ Potri.012G013500.1 4 FAKILSKTDVQK--RLSVPTKYLSSLpsfNGD--RAVEFQAMDESGCVWAFKCSTRRKRHPkPVLTKGWLAFVACKNLKAGDKVAFYKLKNkC 92 789997777776..59*******999*87555..7889***************774444336*************************555523 PP EE CS B3 89 ef 90 ++ Potri.012G013500.1 93 RT 94 33 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 9.037 | 2 | 102 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-12 | 4 | 96 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.1E-18 | 4 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.08E-15 | 4 | 99 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.86E-20 | 4 | 100 | No hit | No description |
SMART | SM01019 | 1.1E-6 | 4 | 104 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence Send to blast |
MENFAKILSK TDVQKRLSVP TKYLSSLPSF NGDRAVEFQA MDESGCVWAF KCSTRRKRHP 60 KPVLTKGWLA FVACKNLKAG DKVAFYKLKN KCRTATHVCK LRTVSACVQA AKTLSLLLLI 120 SGKAAVPFIA FPLLIKDASA AGYAFPFGHR CKNLIYS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.012G013500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011025075.1 | 2e-68 | PREDICTED: B3 domain-containing transcription factor NGA4-like | ||||
TrEMBL | A0A3N7FU95 | 8e-69 | A0A3N7FU95_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0012s02080.1 | 1e-103 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2060 | 7 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01500.1 | 2e-08 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.012G013500.1 |
Entrez Gene | 7489848 |