PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.012G001400.1
Common NamePOPTR_0012s01610g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 360aa    MW: 40488.5 Da    PI: 7.8657
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.012G001400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM181.12.7e-56171431129
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrFhPtdeel+++yL kkv + ++++ ++i +vd++k+ePw+Lp k+k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke
  Potri.012G001400.1  17 LPPGFRFHPTDEELISHYLYKKVLDINFSA-RAIGDVDLNKSEPWELPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKE 106
                         79**************************99.89***************888999************************************* PP

                 NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                         +++ +++lvg+kktLvfykgrapkgekt+Wvmheyrle
  Potri.012G001400.1 107 IYR-GKSLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLE 143
                         ***.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.02E-6514167IPR003441NAC domain
PROSITE profilePS5100560.08917167IPR003441NAC domain
PfamPF023651.2E-2918142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MENISGLGKE DDDKMDLPPG FRFHPTDEEL ISHYLYKKVL DINFSARAIG DVDLNKSEPW  60
ELPWKAKMGE KEWYFFCVRD RKYPTGLRTN RATEAGYWKA TGKDKEIYRG KSLVGMKKTL  120
VFYKGRAPKG EKTNWVMHEY RLEGKFSAHN LPKTAKNEWV ICRVFQKSSA GKKTYISGLV  180
RLGSFGNEFS PYGLPPLTDS SPSNGKIRPV AESAYVPCFS NLSDDQRNQQ DTTDSFNNHL  240
FAVSSNPSEV FPRIPLLNSF YSPQAVAASG NLQYPGSVSI QDRSVLKALI ENQGSNMKQQ  300
SSKLERDMAS VSQDSAADMN NEISSVISNL EAGKRSFDEQ EAPPCTLVQS MDLDCFWNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-5551732171NO APICAL MERISTEM PROTEIN
1ut4_B2e-5551732171NO APICAL MERISTEM PROTEIN
1ut7_A2e-5551732171NO APICAL MERISTEM PROTEIN
1ut7_B2e-5551732171NO APICAL MERISTEM PROTEIN
4dul_A2e-5551732171NAC domain-containing protein 19
4dul_B2e-5551732171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.012G001400.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002318383.20.0NAC domain-containing protein 100
SwissprotQ9FLJ21e-157NC100_ARATH; NAC domain-containing protein 100
TrEMBLB9I5570.0B9I557_POPTR; Uncharacterized protein
STRINGPOPTR_0012s01610.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40934171
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.11e-159NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]