PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.011G168900.1
Common NamePOPTR_0011s17190g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 343aa    MW: 38191.3 Da    PI: 8.1312
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.011G168900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.00033239261123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ykC+ C +sF++   L  H++ H
  Potri.011G168900.1 239 YKCNLCERSFPSGQALGGHMSYH 261
                         9*******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355190323IPR015880Zinc finger, C2H2-like
PfamPF139121.8E-7528IPR007087Zinc finger, C2H2
SuperFamilySSF576678.56E-8178202No hitNo description
PfamPF139121.5E-6179203IPR007087Zinc finger, C2H2
SMARTSM003550.93180202IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.346180207IPR007087Zinc finger, C2H2
PROSITE patternPS000280182202IPR007087Zinc finger, C2H2
SuperFamilySSF576678.56E-8234261No hitNo description
PROSITE profilePS501579.598239261IPR007087Zinc finger, C2H2
SMARTSM003550.028239261IPR015880Zinc finger, C2H2-like
PfamPF139124.2E-9239261IPR007087Zinc finger, C2H2
PROSITE patternPS000280241261IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048235Biological Processpollen sperm cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MSKSCTVCNK VFPSGKSWGG HIRACYKKEE DEKDREDTDD WRVHDCSSSE SESEFEFHVD  60
VDESSTKGSV EPVDLREYLP RGWSGNSKKK RSRKNKLKFA ALNQARKKSF ADHILEAAAL  120
NLLLCSSVCD SKQKGIREEL AKYQDRFAHQ LALNKKPMKS IAYTREKRPS EFKVGHERTY  180
VCRECGLVFD SFQGLGGHLA AHNRKREREK EGKLDLVSGV HQDSRGKNVI IGDAPRKEYK  240
CNLCERSFPS GQALGGHMSY HGTAHKVYKH EGHNSHHTTA DTENNNSASS YEASNGADSH  300
SNPQSSVQVS HLDPQPGSAL DLNMAPDEGV WGNDVGVQKN LS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.011G168900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006378008.10.0zinc finger protein ZAT9
TrEMBLB9N5K00.0B9N5K0_POPTR; Uncharacterized protein
STRINGPOPTR_0011s17190.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.16e-13C2H2 family protein