PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.011G167600.1
Common NamePOPTR_0011s17060g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 328aa    MW: 36207.7 Da    PI: 7.2254
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.011G167600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.19.7e-191461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg WT+eEd +l  +++q+G+++W++I++  g+ R++k+c++rw +yl
  Potri.011G167600.1 14 RGQWTPEEDNKLSSYIAQHGTRNWRLIPKNAGLQRCGKSCRLRWTNYL 61
                        89********************************************97 PP
2Myb_DNA-binding44.14.8e-1468110246
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         g ++  E+  +v+++   G++ W++Ia+ ++ gRt++++k++w++
  Potri.011G167600.1  68 GQFSDAEEHTIVKLHSVVGNR-WSLIAAQLP-GRTDNDVKNHWNT 110
                         7899*****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.6E-25564IPR009057Homeodomain-like
PROSITE profilePS5129426.617965IPR017930Myb domain
SuperFamilySSF466896.74E-2911108IPR009057Homeodomain-like
SMARTSM007176.0E-141363IPR001005SANT/Myb domain
PfamPF002493.2E-171461IPR001005SANT/Myb domain
CDDcd001671.59E-121761No hitNo description
Gene3DG3DSA:1.10.10.601.6E-2365116IPR009057Homeodomain-like
SMARTSM007171.3E-1166114IPR001005SANT/Myb domain
PROSITE profilePS5129420.39166116IPR017930Myb domain
PfamPF002492.0E-1268110IPR001005SANT/Myb domain
CDDcd001671.41E-870112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MGRIPCCEKD NVKRGQWTPE EDNKLSSYIA QHGTRNWRLI PKNAGLQRCG KSCRLRWTNY  60
LRPDLKHGQF SDAEEHTIVK LHSVVGNRWS LIAAQLPGRT DNDVKNHWNT KLKRKLSGMG  120
IDPVTHKPFS HLMAEIATTL ATPQVANLAE AALGCFKDEM LHLLTKKRID FQLLQCNTNG  180
VQGNTSSPYI ATKHDENDDT IERIKLGFSR AMQEPGILPP NKTWDSTGAT SANFAGTCAY  240
FPSSVNAFLC GPSSFGNEVA LSPWSQSMCT GSTCTAGDQQ GRLHEKLDDE NGEESQGGKE  300
IRNGSSLFNT DCVLWDLPSD DLMNSIV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28141167108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in developing anthers during meiosis and young microspore stages. {ECO:0000269|PubMed:16141453}.
Functional Description ? help Back to Top
Source Description
UniProtEssential for tapetum development in anthers and microsporogenesis. May regulate the timing of tapetal programmed cell death (PCD) which is critical for pollen development. {ECO:0000269|PubMed:22086333}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00564DAPTransfer from AT5G56110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.011G167600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006377995.20.0transcription factor MYB80
SwissprotQ7XQN11e-123MYB80_ORYSJ; Transcription factor MYB80
TrEMBLA0A2K1YLE70.0A0A2K1YLE7_POPTR; Uncharacterized protein
STRINGPOPTR_0011s17060.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108783039
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56110.11e-117myb domain protein 103