PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.011G157100.1
Common NamePOPTR_0011s16050g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 451aa    MW: 48592.4 Da    PI: 5.4938
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.011G157100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY986.3e-31230288259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  Potri.011G157100.1 230 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRNDPNMLVITYTSEHNHP 288
                         699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-31223290IPR003657WRKY domain
PROSITE profilePS5081133.006224290IPR003657WRKY domain
SuperFamilySSF1182901.7E-26227290IPR003657WRKY domain
SMARTSM007741.2E-37229289IPR003657WRKY domain
PfamPF031066.8E-26231288IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MDNYQGDLTD ILRASTGGAL GQSDVPVSNW EFPSDPMNLA SSSIMGDSRV NAFGDPFCNL  60
RDPLLHELNV AASSYFSSRS STDHMLSTTS VDQDHTSNNF VGANSATAVF EDHEMHKAAA  120
AATTSRRNIF SRIQISPTTN PTKLPVSPCN SPVIAACSSP RGFRPSAMVS SDVINVNNSK  180
GCLIDNAGSV QISSPTNLGI KRRKSQAKKV VCIPAPAAAN SRSSGEVVPS DLWAWRKYGQ  240
KPIKGSPYPR GYYRCSSSKG CSARKQVERS RNDPNMLVIT YTSEHNHPWP TQRNALAGST  300
RSQPTKSNAA SKSSTGAQAQ KTANTKEDQK ESSNDTSSPT DIIGGSSTAS ASVKEESDDI  360
EKQMEMDDNE FSEGFSQSYR PSMPGQSDQD FFAELGEIDA DPLDLLFTQG INGEEQKESK  420
ALDPFSIFDW SEDTSISFGE AKRGGFITRQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-25204291280Disease resistance protein RRS1
5w3x_D4e-25204291280Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.011G157100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ5132180.0DQ513218.1 Populus trichocarpa clone 196822 TIR-NBS-TIR-TIR-WRKY type disease resistance protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024436664.10.0probable WRKY transcription factor 14
TrEMBLB9I0X20.0B9I0X2_POPTR; Uncharacterized protein
STRINGPOPTR_0011s16050.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54303454
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30650.11e-102WRKY DNA-binding protein 14