PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.011G154800.5 | ||||||||
Common Name | POPTR_0011s15810g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | LSD | ||||||||
Protein Properties | Length: 164aa MW: 17314.1 Da PI: 8.5444 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 36.2 | 9.7e-12 | 7 | 31 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gCr lL YP GA++V+CalC tV Potri.011G154800.5 7 CRGCRSLLLYPSGATNVCCALCSTV 31 9**********************99 PP | |||||||
2 | zf-LSD1 | 39.2 | 1.2e-12 | 46 | 70 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gCrtlL+Y rGA+ VRC++C+ V Potri.011G154800.5 46 CRGCRTLLMYARGATTVRCSCCHIV 70 9**********************98 PP | |||||||
3 | zf-LSD1 | 44.6 | 2.4e-14 | 84 | 108 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+t+L+YP GApsV+Ca+C+ V Potri.011G154800.5 84 CGNCQTTLMYPNGAPSVKCAVCHYV 108 **********************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 1.2E-11 | 4 | 34 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.3E-9 | 7 | 31 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 6.4E-14 | 43 | 71 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 6.7E-11 | 46 | 70 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 1.0E-11 | 81 | 110 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.8E-13 | 84 | 108 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000303 | Biological Process | response to superoxide | ||||
GO:0001666 | Biological Process | response to hypoxia | ||||
GO:0002240 | Biological Process | response to molecule of oomycetes origin | ||||
GO:0009626 | Biological Process | plant-type hypersensitive response | ||||
GO:0009862 | Biological Process | systemic acquired resistance, salicylic acid mediated signaling pathway | ||||
GO:0010104 | Biological Process | regulation of ethylene-activated signaling pathway | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0010602 | Biological Process | regulation of 1-aminocyclopropane-1-carboxylate metabolic process | ||||
GO:0010618 | Biological Process | aerenchyma formation | ||||
GO:0043069 | Biological Process | negative regulation of programmed cell death |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MQSQVVCRGC RSLLLYPSGA TNVCCALCST VTSIPAPGMD LAQLICRGCR TLLMYARGAT 60 TVRCSCCHIV NFAPGPNQVA HVNCGNCQTT LMYPNGAPSV KCAVCHYVTN ISTANVRVPL 120 PANRPSGIGG TMPSTSTVSN WTYFSFLVEN ATKNLGYFVS NAY* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Negative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269|PubMed:15915636}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.011G154800.5 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. Down-regulated by dark. {ECO:0000269|PubMed:15915636}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC182684 | 2e-36 | AC182684.2 Populus trichocarpa clone Pop1-37C15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024467407.1 | 5e-98 | uncharacterized protein LOC7455048 | ||||
Swissprot | Q0J7V9 | 2e-51 | LSD1_ORYSJ; Protein LSD1 | ||||
TrEMBL | A0A2K1YKU7 | 3e-95 | A0A2K1YKU7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0011s15810.1 | 1e-102 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.7 | 2e-52 | LSD family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.011G154800.5 |
Entrez Gene | 7489094 |
Publications ? help Back to Top | |||
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