PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.011G149700.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 443aa    MW: 48867.4 Da    PI: 6.9663
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.011G149700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B31016.9e-32110214199
                         EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.S CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.g 86 
                         f+kv tpsdv+k++rlv+pk++ae++    ++++e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g
  Potri.011G149700.1 110 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSSNEKGLLLNFEDRNGKAWTFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGvG 200
                         89****************************66677899*************************************************6669 PP

                         S.SEE..EEEEE-S CS
                  B3  87 r.sefelvvkvfrk 99 
                         +  + +l++ ++r+
  Potri.011G149700.1 201 ElGKDRLYIDWRRR 214
                         99999999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.3E-41104221IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.09E-29107198IPR015300DNA-binding pseudobarrel domain
CDDcd100171.82E-26108197No hitNo description
PfamPF023622.1E-29110214IPR003340B3 DNA binding domain
SMARTSM010194.4E-23110215IPR003340B3 DNA binding domain
PROSITE profilePS5086314.804110215IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MEFGSGFSEE DQISRGKGLP FSSYSSSSSP SSSSSHQKTQ LVVPLGQIFE NHQMGSWLGN  60
KYDQEDQDTS RFDESGASTA AKLDLMDVND DEEGGRGESS CVVIEKEHMF DKVVTPSDVG  120
KLNRLVIPKQ HAEKYFPLDS SSNEKGLLLN FEDRNGKAWT FRYSYWNSSQ SYVMTKGWSR  180
FVKEKKLDAG DIVSFQRGVG ELGKDRLYID WRRRPDAPDH ASHHQLYHHN LPFSSIPWSP  240
LLMRPPTAPI LPRDHLHLSN PNRNAYYNVG GSYYGHGYGN YNNVVNPCSS SGSVFYMRSS  300
AGAAVEPTPQ QVGMGMVQWQ LGGGGVVEPV VYESVPVVQG KAAAKKLRLF GVNMDCPITD  360
QSDNYDRKLS STTTAAATLP HNATIALQPT PQLASQSLQH PLHQLKLYRG TPLPELPPSN  420
TQFLHKGKSS SSSSSMSLDL DI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A5e-651052153114B3 domain-containing transcription factor NGA1
5os9_B5e-651052153114B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.011G149700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1519550.0AC151955.2 Populus trichocarpa clone Pop1-041G20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024467437.10.0B3 domain-containing protein Os03g0120900
SwissprotO827995e-74NGA1_ARATH; B3 domain-containing transcription factor NGA1
SwissprotQ8LMR96e-74Y3209_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLA0A2K1YKK40.0A0A2K1YKK4_POPTR; Uncharacterized protein
STRINGPOPTR_0011s15270.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23383382
Representative plantOGRP36516108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.19e-69B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  4. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  5. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  6. Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
    DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
    FEBS J., 2018. 285(21): p. 4041-4059
    [PMID:30183137]
  7. Sato H, et al.
    Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
    [PMID:30397148]