PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.011G149300.4

Common Name

POPTR_0011s15230g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NAC

Protein Properties

Length: 610aa MW: 67098.7 Da PI: 4.3418

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.011G149300.4	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	172.7	1.1e-53	10	141	1	127
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lp GfrF+Ptdeel+++yL+ k++g++ e+ evi+e+di+k+ePwdLp + +k+++ ew+fF++rd+ky++g+r+nrat++gyWkatgkd Potri.011G149300.4 10 LPLGFRFRPTDEELISHYLRLKINGRDSEV-EVIPEIDICKWEPWDLPglSVIKTDDPEWFFFCPRDRKYPNGHRSNRATEAGYWKATGKD 99 699**********************999.99***********6447888899***************************** PP NAM 90 kevlsk....kgelvglkktLvfykgrapkgektdWvmheyr 127 ++++s+ +++l+g+kktLvfy+grap+g++t+Wvmheyr Potri.011G149300.4 100 RTIKSRksagNTTLIGMKKTLVFYRGRAPNGKRTNWVMHEYR 141 *977766677*************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.84E-61	4	165	IPR003441	NAC domain
PROSITE profile	PS51005	57.064	10	165	IPR003441	NAC domain
Pfam	PF02365	5.2E-28	11	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 610 aa Download sequence Send to blast
MVAMVPVDSL PLGFRFRPTD EELISHYLRL KINGRDSEVE VIPEIDICKW EPWDLPGLSV 60 IKTDDPEWFF FCPRDRKYPN GHRSNRATEA GYWKATGKDR TIKSRKSAGN TTLIGMKKTL 120 VFYRGRAPNG KRTNWVMHEY RPTEKDLDGT GPGQGAFVLF RLFRKPEERP SIVKYDEIEQ 180 TAYSTTAAKS SPDDASSDLV QETATSEMSS GKQPEDIKMW STESDNTTSN AVVPIDSCSN 240 SRATSDVEDQ IPVDLGYYMD SPYASDFGNN QNGFSFLDGT SEQDVSLTEL LDDYLNNHDD 300 YSGEETSSQN TLGVGSETQL FGQVPPGNFH VKDHGIYNGM AQELVKLWSF DAPPANSAIS 360 SFDVYNSMEE PTSQMTSVDY GSGVSGSGIK IRTRQPQVRR HSDNLVAQGS APRRIRLLVE 420 RSVESVGNFK VNDATHVDDE DEVQSAVTEA TGDAEKQAST VDEDEDEVQS AVTEATGDAE 480 KQASTDDEDE DEVQSAVTEA TGDAEKQASA VDDLQNESPL AISKTNKEIA EESSSNLRLR 540 VKREADSGSG QIASPAFPAA PPAHHGHKSL SIYVSIFLLL ILFIAFAGMW RSLESVKLLW 600 LQDGASDNL*

Sequence ? help Back to Top

Protein Sequence Length: 610 aa Download sequence Send to blast

MVAMVPVDSL PLGFRFRPTD EELISHYLRL KINGRDSEVE VIPEIDICKW EPWDLPGLSV  60
IKTDDPEWFF FCPRDRKYPN GHRSNRATEA GYWKATGKDR TIKSRKSAGN TTLIGMKKTL  120
VFYRGRAPNG KRTNWVMHEY RPTEKDLDGT GPGQGAFVLF RLFRKPEERP SIVKYDEIEQ  180
TAYSTTAAKS SPDDASSDLV QETATSEMSS GKQPEDIKMW STESDNTTSN AVVPIDSCSN  240
SRATSDVEDQ IPVDLGYYMD SPYASDFGNN QNGFSFLDGT SEQDVSLTEL LDDYLNNHDD  300
YSGEETSSQN TLGVGSETQL FGQVPPGNFH VKDHGIYNGM AQELVKLWSF DAPPANSAIS  360
SFDVYNSMEE PTSQMTSVDY GSGVSGSGIK IRTRQPQVRR HSDNLVAQGS APRRIRLLVE  420
RSVESVGNFK VNDATHVDDE DEVQSAVTEA TGDAEKQAST VDEDEDEVQS AVTEATGDAE  480
KQASTDDEDE DEVQSAVTEA TGDAEKQASA VDDLQNESPL AISKTNKEIA EESSSNLRLR  540
VKREADSGSG QIASPAFPAA PPAHHGHKSL SIYVSIFLLL ILFIAFAGMW RSLESVKLLW  600
LQDGASDNL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-43	9	165	16	165	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-43	9	165	16	165	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-43	9	165	16	165	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-43	9	165	16	165	NO APICAL MERISTEM PROTEIN
3swm_A	1e-42	9	165	19	168	NAC domain-containing protein 19
3swm_B	1e-42	9	165	19	168	NAC domain-containing protein 19
3swm_C	1e-42	9	165	19	168	NAC domain-containing protein 19
3swm_D	1e-42	9	165	19	168	NAC domain-containing protein 19
3swp_A	1e-42	9	165	19	168	NAC domain-containing protein 19
3swp_B	1e-42	9	165	19	168	NAC domain-containing protein 19
3swp_C	1e-42	9	165	19	168	NAC domain-containing protein 19
3swp_D	1e-42	9	165	19	168	NAC domain-containing protein 19
4dul_A	9e-43	9	165	16	165	NAC domain-containing protein 19
4dul_B	9e-43	9	165	16	165	NAC domain-containing protein 19
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Induced during normal senescence. {ECO:0000269\|PubMed:18443413}.
Uniprot	TISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers (PubMed:17158162). Expressed in guard cells (PubMed:18443413). {ECO:0000269\|PubMed:17158162, ECO:0000269\|PubMed:18443413}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:18443413, PubMed:24329768). Calmodulin-regulated transcriptional repressor. Binds several synthetic promoters with randomly selected binding sites (PubMed:17947243). Functions synergistically with SNI1 as negative regulator of pathogen-induced PR1 expression and basal resistance to a virulent strain of P.syringae. Binds directly to the promoter of the PR1 gene (PubMed:22826500). Acts as positive regulator of innate immunity. Involved in the effector-triggered immunity (ETI) induction of immunity-related gene expression (PubMed:24329768). Mediates osmotic stress signaling in leaf senescence by up-regulating senescence-associated genes (PubMed:18443413). {ECO:0000269\|PubMed:17947243, ECO:0000269\|PubMed:18443413, ECO:0000269\|PubMed:22826500, ECO:0000269\|PubMed:24329768}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.011G149300.4

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC149298	1e-127	AC149298.1 Populus trichocarpa clone Pop1-021H24, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006377880.2	0.0	protein NTM1-like 9 isoform X1
Swissprot	F4JN35	1e-139	NTL9_ARATH; Protein NTM1-like 9
TrEMBL	A0A2K1YKK9	0.0	A0A2K1YKK9_POPTR; Uncharacterized protein
STRING	POPTR_0011s15230.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35580.3	1e-124	NAC transcription factor-like 9

Link Out ? help Back to Top
Phytozome	Potri.011G149300.4
Entrez Gene	7489068

Publications ? help Back to Top
Zheng XY, et al. Spatial and temporal regulation of biosynthesis of the plant immune signal salicylic acid. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(30): p. 9166-73 [PMID:26139525] Guo T, et al. Lamin-like Proteins Negatively Regulate Plant Immunity through NAC WITH TRANSMEMBRANE MOTIF1-LIKE9 and NONEXPRESSOR OF PR GENES1 in Arabidopsis thaliana. Mol Plant, 2017. 10(10): p. 1334-1348 [PMID:28943325]