PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.011G149300.1
Common NamePOPTR_0011s15230g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 698aa    MW: 76337.7 Da    PI: 4.2872
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.011G149300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.41.4e-53101411127
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                         lp GfrF+Ptdeel+++yL+ k++g++ e+ evi+e+di+k+ePwdLp  + +k+++ ew+fF++rd+ky++g+r+nrat++gyWkatgkd
  Potri.011G149300.1  10 LPLGFRFRPTDEELISHYLRLKINGRDSEV-EVIPEIDICKWEPWDLPglSVIKTDDPEWFFFCPRDRKYPNGHRSNRATEAGYWKATGKD 99 
                         699************************999.99***************6447888899********************************* PP

                 NAM  90 kevlsk....kgelvglkktLvfykgrapkgektdWvmheyr 127
                         ++++s+    +++l+g+kktLvfy+grap+g++t+Wvmheyr
  Potri.011G149300.1 100 RTIKSRksagNTTLIGMKKTLVFYRGRAPNGKRTNWVMHEYR 141
                         *****977766677***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.28E-614165IPR003441NAC domain
PROSITE profilePS5100557.06410165IPR003441NAC domain
PfamPF023656.5E-2811141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 698 aa     Download sequence    Send to blast
MVAMVPVDSL PLGFRFRPTD EELISHYLRL KINGRDSEVE VIPEIDICKW EPWDLPGLSV  60
IKTDDPEWFF FCPRDRKYPN GHRSNRATEA GYWKATGKDR TIKSRKSAGN TTLIGMKKTL  120
VFYRGRAPNG KRTNWVMHEY RPTEKDLDGT GPGQGAFVLF RLFRKPEERP SIVKYDEIEQ  180
TAYSTTAAKS SPDDASSDLV QETATSEMSS GKQPEDIKMW STESDNTTSN AVVPIDSCSN  240
SRATSDVEDQ VPEATAVEAY LPLDENSPLH EPMSGEPDCK VFSPMRSQIP VDLGYYMDSP  300
YASDFGNNQN GFSFLDGTSE QDVSLTELLD DYLNNHDDYS GEETSSQNTL GVGSETQLFG  360
QVPPGNFHVK DHGIYNGMAQ ELHASHMGAP VWPGDQFDSY ELLQLQTALG TCQAPTSFSD  420
GEIGGGNIGH FGNNFVGQDA PPANSAISSF DVYNSMEEPT SQMTSVDYGS GVSGSGIKIR  480
TRQPQVRRHS DNLVAQGSAP RRIRLLVERS VESVGNFKVN DATHVDDEDE VQSAVTEATG  540
DAEKQASTVD EDEDEVQSAV TEATGDAEKQ ASTDDEDEDE VQSAVTEATG DAEKQASAVD  600
DLQNESPLAI SKTNKEIAEE SSSNLRLRVK READSGSGQI ASPAFPAAPP AHHGHKSLSI  660
YVSIFLLLIL FIAFAGMWRS LESVKLLWLQ DGASDNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-43916519168NAC domain-containing protein 19
3swm_B4e-43916519168NAC domain-containing protein 19
3swm_C4e-43916519168NAC domain-containing protein 19
3swm_D4e-43916519168NAC domain-containing protein 19
3swp_A4e-43916519168NAC domain-containing protein 19
3swp_B4e-43916519168NAC domain-containing protein 19
3swp_C4e-43916519168NAC domain-containing protein 19
3swp_D4e-43916519168NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.011G149300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1492981e-127AC149298.1 Populus trichocarpa clone Pop1-021H24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006377880.20.0protein NTM1-like 9 isoform X1
TrEMBLA0A2K1YKK90.0A0A2K1YKK9_POPTR; Uncharacterized protein
STRINGPOPTR_0011s15230.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF136251825
Representative plantOGRP1172646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.11e-124NAC 014