PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.011G148900.1
Common NamePOPTR_0011s15190g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 290aa    MW: 30974.2 Da    PI: 4.9218
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.011G148900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.23.1e-162170256
                 AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56
                        ++ GV +++ +grWvAeI+d      ++ r +lg+f+tae+Aa+a++ a+++l+g+
  Potri.011G148900.1 21 RFVGV-QRP-SGRWVAEIKD----SlQKVRLWLGTFDTAEDAARAYDDAARALRGA 70
                        57899.589.7*********....4456*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103218.9131977IPR001471AP2/ERF domain
CDDcd000181.06E-142177No hitNo description
SMARTSM003804.9E-312183IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.4E-262377IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-172578IPR016177DNA-binding domain
PfamPF008475.1E-92669IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MGAPSGGLRG RRKSSTRGHH RFVGVQRPSG RWVAEIKDSL QKVRLWLGTF DTAEDAARAY  60
DDAARALRGA NARTNFELPQ PAPNSGPGGR ANLSEVEPFS FEDVCGTGTE AEGILASITH  120
GVGTVNAIQD PGSSGSGKGD LVLDLDHGDM MAGHVAAAQW SQPCQTTATA NMEWPSEPAS  180
YEVSWATQMN HIYVQAALFT SSTTIATSAW PLSATTQPSF DSTYPYPCAT ELLMNKISRT  240
MTTNMPSPQI DGPTEGVWSA EQQFLHCDNS GWTGANSSSW DPFLLYPQC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.011G148900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011004420.10.0PREDICTED: ethylene-responsive transcription factor TINY-like
TrEMBLB9I0P30.0B9I0P3_POPTR; Uncharacterized protein
STRINGPOPTR_0011s15190.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113333035
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-13related to AP2 11