PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.011G129500.2
Common NamePOPTR_0011s13320g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 452aa    MW: 49333.1 Da    PI: 6.4418
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.011G129500.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.85.9e-063423801154
                         HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Potri.011G129500.2 342 ARKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 380
                         6778999**********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.925331380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0026337386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-11341396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.41E-6343384No hitNo description
Gene3DG3DSA:4.10.280.104.7E-9345385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MADEYTSTNW WDSSSSSRNR FDSTGSSSTT SGHTSLGSFA WPTEMVDVKG RSSMETVSVS  60
DSSVVFHDSQ KLQQGHDSSA DLHMMGLGLS SPAIDWNQAL LRGDKSENSF RSMLQDNLSS  120
STNYQQETGI GSSQAQWRSS ERVFAGVSGD SSMNEFKQMN RGFSLDQPQF SPHGSSSDST  180
VTGQGLQSSF PMDSSGIYGS PSTMLQGLLG SDNQVQQSSF DNRSMGYAYG ANYGVSTNEL  240
LPSWSKIPQF LRNSPPKQPP HNQLHLSNNA PFWNASSSAM SDVRPSFFPS MQPQFTTSNF  300
DEKPKNISEV RDSNTAVKKS GGEAGAKRPR NETPSPSPAF KARKEKMGDR ITALQQLVSP  360
FGKTDTASVL SEAIEYIKFL HEQVTVLCTP YMKNGAPIHH QQSSEKSRDS EGQKQDLRSL  420
GLCLVPVSST FPVTHETTVD FWTPTFGGTF R*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.011G129500.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002317553.10.0transcription factor bHLH123
SwissprotQ8GXT35e-94BH123_ARATH; Transcription factor bHLH123
TrEMBLB9I0570.0B9I057_POPTR; Uncharacterized protein
STRINGPOPTR_0011s13320.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.11e-94bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]