PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.011G125900.1
Common NamePOPTR_0011s12750g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 352aa    MW: 39494.3 Da    PI: 7.0887
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.011G125900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.23.3e-171461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd++l+ +++++G g+W+  ++  g++R++k+c++rw +yl
  Potri.011G125900.1 14 KGPWTAEEDQKLITYIQKHGHGRWRILPKNAGLKRCGKSCRLRWTNYL 61
                        79********************************************97 PP
2Myb_DNA-binding54.92e-1767111147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg+++ eE+e +++++  lG++ W+tIa +++ gRt++++k++w+++
  Potri.011G125900.1  67 RGKFSDEEEETIIQLHGILGNK-WSTIATRLP-GRTDNEIKNYWNTH 111
                         89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-25564IPR009057Homeodomain-like
PROSITE profilePS5129419.142961IPR017930Myb domain
SuperFamilySSF466898.99E-3111108IPR009057Homeodomain-like
SMARTSM007171.3E-151363IPR001005SANT/Myb domain
PfamPF002495.2E-161461IPR001005SANT/Myb domain
CDDcd001678.51E-131661No hitNo description
PROSITE profilePS5129426.85562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-2665116IPR009057Homeodomain-like
SMARTSM007176.1E-1666114IPR001005SANT/Myb domain
PfamPF002492.3E-1567111IPR001005SANT/Myb domain
CDDcd001678.66E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MGKSPSCDKN GLKKGPWTAE EDQKLITYIQ KHGHGRWRIL PKNAGLKRCG KSCRLRWTNY  60
LRPDIKRGKF SDEEEETIIQ LHGILGNKWS TIATRLPGRT DNEIKNYWNT HIKKRLLMMG  120
IDPATHKPRL DLLQHCSALS SCLHNSSQLS IPSLLGMGPI LNPNLLNLAT SFLSCQGNIS  180
QDVSPRHFHE SQRRNNQVND QFQCLQPNEL QNQAQACTNT SGAQSLNETQ ISEANLEQLI  240
SSDPTNFSCQ NSLQSSWHTI EETPNVSESL MSNYVYHDCN NKPIIINDNS FETLPSLSFG  300
SLLSTPSYNT TPLHSSSTTY VNVSDEDEKN IYCSDMLSFD IPSCLDGNRL V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-32121165108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.011G125900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2164490.0AC216449.1 Populus trichocarpa clone POP006-O09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002316936.10.0transcription factor MYB41
TrEMBLB9I0180.0B9I018_POPTR; Uncharacterized protein
STRINGPOPTR_0011s12750.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85034127
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.15e-94MYB-like 102