PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.011G123500.1
Common NamePOPTR_0011s12420g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 356aa    MW: 39227.2 Da    PI: 8.5739
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.011G123500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.61.2e-53231501128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrFhPtdeelvv+yLkkk+++ +l++  +i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g+r+nra++sgyWkatg+dk+
  Potri.011G123500.1  23 LPPGFRFHPTDEELVVHYLKKKTTSAPLPM-AIIAEVDLYKFDPWELPAKATFGEQEWYFFSPRDRKYPNGTRPNRAATSGYWKATGTDKP 112
                         79****************************.88***************988899************************************* PP

                 NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +l+  ++++vg+kk Lvfy g+ pkg kt+W+mheyrl
  Potri.011G123500.1 113 ILTLgGTQKVGVKKALVFYGGKPPKGIKTNWIMHEYRL 150
                         *99867888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-6419184IPR003441NAC domain
PROSITE profilePS5100561.70923184IPR003441NAC domain
PfamPF023654.8E-2824150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MESTDSSTGG AGGGGGGSQQ PNLPPGFRFH PTDEELVVHY LKKKTTSAPL PMAIIAEVDL  60
YKFDPWELPA KATFGEQEWY FFSPRDRKYP NGTRPNRAAT SGYWKATGTD KPILTLGGTQ  120
KVGVKKALVF YGGKPPKGIK TNWIMHEYRL ADNKVKNKPP GCDLGNKKNS LRLDDWVLCR  180
IYKKNNTHRP IDHDKDDYMD DILGSIPPSI LVGNHQNGTL HLAKGTNYET LLDNDHNLFE  240
GIISSNDGIR SSSSMSHVAS SVSKPDHLPM LPLKRTLPSL YWTDEDMAVP SSSKRFQGDI  300
NGDESVVGND GNSSIVTLLS QLPQTSQLHQ HTMLGSMGNG IFRPPYQIPG MNWYS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-732018714168NO APICAL MERISTEM PROTEIN
1ut4_B5e-732018714168NO APICAL MERISTEM PROTEIN
1ut7_A5e-732018714168NO APICAL MERISTEM PROTEIN
1ut7_B5e-732018714168NO APICAL MERISTEM PROTEIN
4dul_A5e-732018714168NAC domain-containing protein 19
4dul_B5e-732018714168NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed throughout anthers from stages 8 to 12. Later confined to distal region of anthers from stage 13. {ECO:0000269|PubMed:16055634}.
UniprotTISSUE SPECIFICITY: Stamen specific, in anthers from stage 8 (PubMed:15100403, PubMed:16055634). Expressed in the outer integument, but seems not expressed in the embryo at the torpedo stage (PubMed:18849494). {ECO:0000269|PubMed:15100403, ECO:0000269|PubMed:16055634, ECO:0000269|PubMed:18849494}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.011G123500.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002316919.20.0NAC transcription factor 56
SwissprotQ9LD441e-118NAC56_ARATH; NAC transcription factor 56
TrEMBLB9HZY60.0B9HZY6_POPTR; NAC family protein
STRINGPOPTR_0011s12420.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16233498
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.11e-110NAC domain containing protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]