PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.011G123300.1 | ||||||||
Common Name | POPTR_0011s12400g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 343aa MW: 37971.7 Da PI: 8.551 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.6 | 2.1e-52 | 14 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdeel+v+yL+kkv+g++++l ++i e+d+yk++Pw Lp k+ +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk Potri.011G123300.1 14 LPPGFRFHPTDEELLVQYLCKKVAGHHFSL-QIIGEIDLYKFDPWFLPGKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKV 103 79***************************9.89***************7767799************************************ PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +g++vg+kk Lvfy g+apkg+kt+W+mheyrl Potri.011G123300.1 104 ITT-EGRKVGIKKALVFYVGKAPKGTKTNWIMHEYRL 139 *99.999****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-66 | 9 | 163 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.449 | 14 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-26 | 15 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MGLQETDPLA QLSLPPGFRF HPTDEELLVQ YLCKKVAGHH FSLQIIGEID LYKFDPWFLP 60 GKAIFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKVITTEGRK VGIKKALVFY 120 VGKAPKGTKT NWIMHEYRLL ESSRKSGSTK LDEWVLCRIY KKNSSAAQKS MSSVSSKEYS 180 TNGSCSSSSS HLEDVLDSLT EIDDRLFALP RTNSLKQMQH EEKINLANLG SGSFDWATLA 240 GLNSLPELLQ TQPGANYSNT NVNGVHVPSM PPLCHADSST GRMGTSVEEE VQSGVRTQLR 300 DGNSGAFQQN SGVMTPNFSS TLLDPYELRY STQPGSGYGF RQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-109 | 1 | 168 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-109 | 1 | 168 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-109 | 1 | 168 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-109 | 1 | 168 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-109 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-109 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-109 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-109 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-109 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-109 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-109 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-109 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-109 | 1 | 168 | 4 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-109 | 1 | 168 | 4 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.8122 | 0.0 | bud| leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in guard cells of the epidermis. {ECO:0000269|PubMed:25005917}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.011G123300.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419, ECO:0000269|PubMed:30610166}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF147142 | 0.0 | EF147142.1 Populus trichocarpa clone WS01228_D08 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002316917.1 | 0.0 | NAC domain-containing protein 72 | ||||
Swissprot | A0A3Q7HH64 | 1e-143 | JA2L_SOLLC; NAC domain-containing protein JA2L | ||||
TrEMBL | B9HZY3 | 0.0 | B9HZY3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0011s12400.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4429 | 33 | 60 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27410.2 | 1e-123 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.011G123300.1 |
Entrez Gene | 7460841 |
Publications ? help Back to Top | |||
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