PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.011G114500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 214aa MW: 24526.3 Da PI: 6.9545 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 54.3 | 2.3e-17 | 63 | 115 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + ++t++q++ Le+ F ++++ e + +LA++lg++ rq+ +W+qN+Ra++k Potri.011G114500.1 63 KKRLTHDQVRLLERTFTTTKKLEPELKVQLANQLGVPPRQIAIWYQNKRARWK 115 5679************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 107.6 | 9.2e-35 | 62 | 153 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +k+rl+++qv+lLE++F++++kLepe Kv+la++Lg+ prq+a+W+qn+RAR+kt+ lE dy++L+++++ ++++rLe+ev +L+eel+ Potri.011G114500.1 62 NKKRLTHDQVRLLERTFTTTKKLEPELKVQLANQLGVPPRQIAIWYQNKRARWKTQSLELDYNSLHAKLEDALADRRRLEREVVQLQEELR 152 79**************************************************************************************998 PP HD-ZIP_I/II 93 e 93 + Potri.011G114500.1 153 R 153 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.29E-17 | 37 | 118 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.305 | 57 | 117 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.4E-14 | 59 | 121 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.15E-13 | 63 | 118 | No hit | No description |
Pfam | PF00046 | 9.9E-15 | 63 | 115 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-18 | 63 | 124 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 92 | 115 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009646 | Biological Process | response to absence of light | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MDDNCSETPF LPYKKGNELI NFFKQHNFQD NYFPQLNSPT SIAMDFFHSQ NQHSPKHQNS 60 SNKKRLTHDQ VRLLERTFTT TKKLEPELKV QLANQLGVPP RQIAIWYQNK RARWKTQSLE 120 LDYNSLHAKL EDALADRRRL EREVVQLQEE LRRAQQMVFH LNQGPAQPPV NVSSNSSCDE 180 GGSSSLHEEA NGEVLQLEEL YACLYGAGGS TWG* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.011G114500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC237585 | 0.0 | AC237585.1 Populus trichocarpa clone POP011-E13, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011029534.1 | 1e-134 | PREDICTED: homeobox-leucine zipper protein ATHB-52-like | ||||
Swissprot | Q9FN29 | 3e-42 | ATB52_ARATH; Homeobox-leucine zipper protein ATHB-52 | ||||
TrEMBL | A0A3N7HFD2 | 1e-123 | A0A3N7HFD2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0011s11510.1 | 1e-123 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11011 | 22 | 39 | Representative plant | OGRP129 | 16 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53980.1 | 6e-33 | homeobox protein 52 |
Link Out ? help Back to Top | |
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Phytozome | Potri.011G114500.1 |