PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.011G098300.1
Common NameHB3
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HD-ZIP
Protein Properties Length: 844aa    MW: 92739.9 Da    PI: 6.2876
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.011G098300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.72e-181674357
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                        k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Potri.011G098300.1 16 KYVRYTPEQVEALERVYTECPKPSSLRRQQLIRECpilcNIEPKQIKVWFQNRRCREKQ 74
                        6789*****************************************************97 PP
2START176.31.9e-551653722204
                         HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EE CS
               START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..ga 90 
                         +aee+++e+++ka+ ++  Wv++  +++g++++ +++ s+++sg a+ra+g+v  ++   v+e+l+d++ W ++++  +++ vi +g  g+
  Potri.011G098300.1 165 IAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPI-KVAEILKDRPSWFRDCRCLDIMSVIPTGsgGT 254
                         7899******************************************************.8888888888********************** PP

                         EEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS
               START  91 lqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177
                         ++l++++++a+++l++ Rdf+++Ry+ +l++g++vi+++S++s +  p+   sss+vRa +lpSg+li+p+++g+s +++v+hvdl+ +++
  Potri.011G098300.1 255 IELIYMQTYAPTTLAAaRDFWTLRYTTTLEDGSLVICERSLTSSTGGPTgppSSSFVRADMLPSGYLIRPCEGGGSIIHIVDHVDLDVWSV 345
                         ********************************************99999999*************************************** PP

                         HHHHHHHHHHHHHHHHHHHHHHTXXXX CS
               START 178 hwllrslvksglaegaktwvatlqrqc 204
                         +++lr+l++s+ + ++k+++a+lq+ +
  Potri.011G098300.1 346 PEVLRPLYESSKILAQKMTMAALQYIR 372
                         ************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.6611175IPR001356Homeobox domain
SMARTSM003898.2E-151379IPR001356Homeobox domain
PfamPF000465.0E-161674IPR001356Homeobox domain
CDDcd000864.03E-161676No hitNo description
SuperFamilySSF466896.42E-161677IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-181874IPR009057Homeodomain-like
CDDcd146863.68E-668107No hitNo description
PROSITE profilePS5084826.539155383IPR002913START domain
CDDcd088752.48E-71159375No hitNo description
SMARTSM002341.2E-51164374IPR002913START domain
Gene3DG3DSA:3.30.530.201.9E-21164365IPR023393START-like domain
PfamPF018529.1E-53165372IPR002913START domain
SuperFamilySSF559612.75E-37165376No hitNo description
PfamPF086701.5E-50698842IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 844 aa     Download sequence    Send to blast
MALSMHSKDK QMDSSKYVRY TPEQVEALER VYTECPKPSS LRRQQLIREC PILCNIEPKQ  60
IKVWFQNRRC REKQRKESSR LQTVNRKLTA MNKLLMEEND RLQKQVSHLV YENGYMRQQI  120
QTASATATDN SCESVVMSGQ HQQQQNPTPQ QPQRDANNPA GLLTIAEETL AEFLSKATGT  180
AVDWVQMIGM KPGPDSIGIV AVSRNCSGVA ARACGLVSLE PIKVAEILKD RPSWFRDCRC  240
LDIMSVIPTG SGGTIELIYM QTYAPTTLAA ARDFWTLRYT TTLEDGSLVI CERSLTSSTG  300
GPTGPPSSSF VRADMLPSGY LIRPCEGGGS IIHIVDHVDL DVWSVPEVLR PLYESSKILA  360
QKMTMAALQY IRQIAQETSG EIQYGGGRQP AVLRTFSQRL CRGFNDAVNG FTDSGWSLLD  420
GDGGDDVTIV INSSPTKFLG SQYNASISPT FGGVLCAKAS MLLQNVPPAL LVRFLREHRS  480
EWADYGVDVY SAACLKASPY AVPCARPGGF PSSQVILPLA HTVEHEEFLE VVRLEGHAFS  540
PEDVALAQDM YLLQLCSGVD ENALGACAQL VFAPIDESFA DDAPLLPSGF RVIPLDPKTD  600
APAATRTLDL ASTLEVGPGG ARPASEADTN SYNLRSVLTI AFQFTFENHF RDNVAAMARQ  660
YVRGVVASVQ RVAMAISPSR LSSNMGPKSL PVSPEALTLA RWIYRSYRIH TGGELFRVDS  720
QAGDALLKRL WHHSDAIMCC SLKTNASPVF TFANQAGLDM LETTLVALQD IMLDKILDEA  780
GRKILCSEFS KIMQQGYAYL PAGICVSSMG RPVSYEQAIA WKVLNDDNSN HCLAFMFINW  840
SFV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.131600.0stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.011G098300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY9196180.0AY919618.1 Populus trichocarpa class III HD-Zip protein 3 (HB3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006377667.20.0homeobox-leucine zipper protein ATHB-14
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A2K1YI100.0A0A2K1YI10_POPTR; Uncharacterized protein
STRINGPOPTR_0011s10070.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51763353
Representative plantOGRP6511671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Ko JH,Prassinos C,Han KH
    Developmental and seasonal expression of PtaHB1, a Populus gene encoding a class III HD-Zip protein, is closely associated with secondary growth and inversely correlated with the level of microRNA (miR166).
    New Phytol., 2006. 169(3): p. 469-78
    [PMID:16411950]
  3. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  4. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]