PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.011G097500.2
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HB-other
Protein Properties Length: 266aa    MW: 30466.8 Da    PI: 7.4424
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.011G097500.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox19.71.4e-0623662255
                        SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
            Homeobox 22 nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
                        n  p +e    LA+k           +++ +qV +WFqNrR+  
  Potri.011G097500.2 23 NTMPAREVLVSLAEKFsespdrkgniQVQMKQVWNWFQNRRYAI 66
                        6677788888888888888888888899*************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500718.8431069IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.0E-61174IPR009057Homeodomain-like
SuperFamilySSF466891.45E-81671IPR009057Homeodomain-like
CDDcd000860.004972167No hitNo description
PfamPF167193.5E-39130246IPR032001SAWADEE domain
CDDcd000240.00296144176No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MFCALPSFFK VTEMDAILQE HNNTMPAREV LVSLAEKFSE SPDRKGNIQV QMKQVWNWFQ  60
NRRYAIRAKS NKTPMKLNIT PMPRDDLVAA RGLSQQVAAP IPGAVPATTP ASSGRMNSEV  120
LRTFSLKNSY MEFEAKSARD GAWYDVGTFL SHRYLDKGEP EVLVRFAGFG PDEDEWLNVC  180
RQVRQRSLPC EASECVAVLP GDLILCFQEG KDQALYFDAH VLDAQRRRHD VRGCRCRFLV  240
RYDHDQSEVY LHFFLFNLEI HFSCF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A2e-401312514124SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B2e-401312514124SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A2e-401312514124SHH1 SAWADEE
4iur_B2e-401312514124SHH1 SAWADEE
4iut_A2e-401312514124SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B2e-401312514124SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A2e-401312514124SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B2e-401312514124SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A2e-401312514124SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B2e-401312514124SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.011G097500.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011008296.11e-164PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2-like isoform X2
SwissprotQ8RWJ71e-116SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A2K1YHZ21e-162A0A2K1YHZ2_POPTR; Uncharacterized protein
TrEMBLA0A3N7FR891e-162A0A3N7FR89_POPTR; Uncharacterized protein
STRINGcassava4.1_011330m1e-132(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-105sequence-specific DNA binding transcription factors;sequence-specific DNA binding