PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.011G097500.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HB-other
Protein Properties Length: 335aa    MW: 37298.9 Da    PI: 6.8618
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.011G097500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox19.81.3e-0620741355
                        HHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
            Homeobox 13 eeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
                        +e+ +  ++  n  p +e    LA+k           +++ +qV +WFqNrR+  
  Potri.011G097500.1 20 TEMDAILQEhnNTMPAREVLVSLAEKFsespdrkgniQVQMKQVWNWFQNRRYAI 74
                        55555555433788999999999999999999999999**************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.7E-9579IPR009057Homeodomain-like
PROSITE profilePS500719.3451377IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-61381IPR009057Homeodomain-like
CDDcd000860.009062975No hitNo description
PfamPF167191.4E-41134261IPR032001SAWADEE domain
CDDcd000240.00313148180No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MGRPPSNGGP SFRFMQNEVT EMDAILQEHN NTMPAREVLV SLAEKFSESP DRKGNIQVQM  60
KQVWNWFQNR RYAIRAKSNK TPMKLNITPM PRDDLVAARG LSQQVAAPIP GAVPATTPAS  120
SAAGAGRATS ENSYMEFEAK SARDGAWYDV GTFLSHRYLD KGEPEVLVRF AGFGPDEDEW  180
LNVCRQVRQR SLPCEASECV AVLPGDLILC FQEGKDQALY FDAHVLDAQR RRHDVRGCRC  240
RFLVRYDHDQ SEEIVPLRKI CRRPETDYRL LQLHAANDLA ANDQKETSVD PSTANAQRVA  300
ASALETTQQQ QHNSDVAMAV LASQANVSQP VKTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A7e-471352654134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B7e-471352654134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A7e-471352654134SHH1 SAWADEE
4iur_B7e-471352654134SHH1 SAWADEE
4iut_A7e-471352654134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B7e-471352654134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A7e-471352654134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B7e-471352654134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A7e-471352654134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B7e-471352654134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.011G097500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024467544.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X2
SwissprotQ8RWJ71e-149SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A2K1YHZ20.0A0A2K1YHZ2_POPTR; Uncharacterized protein
STRINGEOY131340.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68163139
Representative plantOGRP16411419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-129sequence-specific DNA binding transcription factors;sequence-specific DNA binding