PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.011G096600.1 | ||||||||
Common Name | POPTR_0011s09890g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | TCP | ||||||||
Protein Properties | Length: 409aa MW: 44495.2 Da PI: 7.0003 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 119.6 | 3.8e-37 | 35 | 153 | 2 | 104 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....................ssssase 72 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak++i+el+++ s+++++ Potri.011G096600.1 35 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKTSIDELAELpawdpttagftpktsktatrSTKQQNI 125 89**************************************************************777666664443322222222222222 PP TCP 73 ceaesssssasnsssg..........kaaksaa.kskksqksa 104 + a+s+ + +++q++ Potri.011G096600.1 126 ---------------CdekeyglsveNVATSKIaEVQNTQQQM 153 ...............2333445555422222221222222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.6E-33 | 35 | 151 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.637 | 37 | 95 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 409 aa Download sequence Send to blast |
MGESHHQAAT SSRLGISNTV GEIVEVQGGL IVRPTGRKDR HSKVCTAKGP RDRRVRLSAH 60 TAIQFYDVQD RLGYDRPSKA VDWLIKKAKT SIDELAELPA WDPTTAGFTP KTSKTATRST 120 KQQNICDEKE YGLSVENVAT SKIAEVQNTQ QQMAENPNSS LGFLPPSLES DVIADTIKTF 180 FPILGASTET SSPTIQFQNY PPDLMSRTSS QSQDLRLSLL SFQGPILLQH QAHHHGHQAQ 240 SEHQVFSGTT AHHVGFDCSS GGWSEQHHPQ EITRFQRNLV AWNAADAGSG GGGSAGLIFN 300 APLPPPQTMP PSPLVQPFFG QNQFFSQRGT LQSSNTPSFR AWIDPAITPD HHLQLQQQQQ 360 QTAISGIGFT ASDGGFSGFR VPTRIQGEEE ERDGIHNKPS SASSDSRS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-20 | 42 | 95 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 2e-20 | 42 | 95 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.15813 | 1e-148 | catkin| leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in cotyledons during embryogenesis. Expressed during ovule development (PubMed:25378179). {ECO:0000269|PubMed:25378179}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in cotyledons, particularly in the vascular region, in leaves, roots, buds, flowers and immature siliques. {ECO:0000269|PubMed:17307931}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18816164, ECO:0000269|PubMed:25378179}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.011G096600.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:18816164}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002317368.2 | 0.0 | transcription factor TCP4 | ||||
Swissprot | Q8LPR5 | 1e-103 | TCP4_ARATH; Transcription factor TCP4 | ||||
TrEMBL | A0A2K1YHY1 | 0.0 | A0A2K1YHY1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0011s09890.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1163 | 34 | 105 | Representative plant | OGRP180 | 15 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 3e-88 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.011G096600.1 |
Entrez Gene | 7471894 |