PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.011G087900.1
Common NamePOPTR_0011s09030g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 562aa    MW: 60858.3 Da    PI: 7.3815
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.011G087900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY971.2e-30209266260
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                         dDgy+WrKYGqK+vkgsefprsYY+Ct+++C+vkk  e+s+ d++++ei+Y+g+H+h+k
  Potri.011G087900.1 209 DDGYKWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFECSH-DGQITEIIYKGTHDHPK 266
                         8***************************************9.***************85 PP

2WRKY106.31.6e-33375433159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  Potri.011G087900.1 375 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 433
                         59********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.182203267IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.7E-26206267IPR003657WRKY domain
SuperFamilySSF1182906.67E-24206267IPR003657WRKY domain
SMARTSM007743.4E-32208266IPR003657WRKY domain
PfamPF031062.2E-23209265IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-37360435IPR003657WRKY domain
SuperFamilySSF1182903.27E-29367435IPR003657WRKY domain
PROSITE profilePS5081138.825370435IPR003657WRKY domain
SMARTSM007743.1E-39375434IPR003657WRKY domain
PfamPF031063.3E-26376433IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MDNINSRSEV PDGGDPTRPD TCGGGARYKL MSPAKLPISR SACTMISPGL SPTSFLESPV  60
LLSNVKAEPS PTTGTFTNPQ TVLGSLSSTS YPATTVYSTN FGERKSNCFE FRPHARSDMV  120
SADMNHQRSA QCVKVQSQCQ SQSFPSSPSV KGEMAVCTNE LTLSTPLHMV TSGSSVPAEV  180
DSDELNQMGL SSSGLRASQS GSAPTVSSDD GYKWRKYGQK HVKGSEFPRS YYKCTHPNCE  240
VKKLFECSHD GQITEIIYKG THDHPKPQPS RRYASGSGLF MLEERFDKFS SLPSQDDKSP  300
GAYGQVSHAI EPDGAPELSP GTTNDDTGEG AEDDKDPFSK RSRRLDAGGF DVTPVIKPIR  360
EPRVVVQTQS EVDILDDGYR WRKYGQKVVR GNPNPRSYYK CTNAGCPVRK HVERASHDPK  420
AVITTYEGKH NHDVPTARTN SHDTAGPSAV NGTSRTRPDK NETISLDLGV GISSTSENLS  480
SDQQQALHAE LVRFENQSSS GSSFRIVHAS PIAAYYGVLN GGMNQYGSRQ IPSEGRSIEI  540
PPLNRSSYPY PQNVGSLLTG P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-36209435877Probable WRKY transcription factor 4
2lex_A1e-36209435877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.011G087900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2080470.0AC208047.1 Populus trichocarpa clone JGIACSB05-H10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024437369.10.0probable WRKY transcription factor 20 isoform X1
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A2I4KKZ50.0A0A2I4KKZ5_POPTR; WRKY family protein
STRINGPOPTR_0001s37260.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39463463
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.20.0WRKY family protein