PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.011G087900.1 | ||||||||
Common Name | POPTR_0011s09030g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | WRKY | ||||||||
Protein Properties | Length: 562aa MW: 60858.3 Da PI: 7.3815 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97 | 1.2e-30 | 209 | 266 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 dDgy+WrKYGqK+vkgsefprsYY+Ct+++C+vkk e+s+ d++++ei+Y+g+H+h+k Potri.011G087900.1 209 DDGYKWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFECSH-DGQITEIIYKGTHDHPK 266 8***************************************9.***************85 PP | |||||||
2 | WRKY | 106.3 | 1.6e-33 | 375 | 433 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+ Potri.011G087900.1 375 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 433 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 22.182 | 203 | 267 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 5.7E-26 | 206 | 267 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.67E-24 | 206 | 267 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.4E-32 | 208 | 266 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.2E-23 | 209 | 265 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.3E-37 | 360 | 435 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.27E-29 | 367 | 435 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.825 | 370 | 435 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.1E-39 | 375 | 434 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.3E-26 | 376 | 433 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 562 aa Download sequence Send to blast |
MDNINSRSEV PDGGDPTRPD TCGGGARYKL MSPAKLPISR SACTMISPGL SPTSFLESPV 60 LLSNVKAEPS PTTGTFTNPQ TVLGSLSSTS YPATTVYSTN FGERKSNCFE FRPHARSDMV 120 SADMNHQRSA QCVKVQSQCQ SQSFPSSPSV KGEMAVCTNE LTLSTPLHMV TSGSSVPAEV 180 DSDELNQMGL SSSGLRASQS GSAPTVSSDD GYKWRKYGQK HVKGSEFPRS YYKCTHPNCE 240 VKKLFECSHD GQITEIIYKG THDHPKPQPS RRYASGSGLF MLEERFDKFS SLPSQDDKSP 300 GAYGQVSHAI EPDGAPELSP GTTNDDTGEG AEDDKDPFSK RSRRLDAGGF DVTPVIKPIR 360 EPRVVVQTQS EVDILDDGYR WRKYGQKVVR GNPNPRSYYK CTNAGCPVRK HVERASHDPK 420 AVITTYEGKH NHDVPTARTN SHDTAGPSAV NGTSRTRPDK NETISLDLGV GISSTSENLS 480 SDQQQALHAE LVRFENQSSS GSSFRIVHAS PIAAYYGVLN GGMNQYGSRQ IPSEGRSIEI 540 PPLNRSSYPY PQNVGSLLTG P* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-36 | 209 | 435 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 1e-36 | 209 | 435 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.011G087900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC208047 | 0.0 | AC208047.1 Populus trichocarpa clone JGIACSB05-H10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024437369.1 | 0.0 | probable WRKY transcription factor 20 isoform X1 | ||||
Swissprot | Q93WV0 | 0.0 | WRK20_ARATH; Probable WRKY transcription factor 20 | ||||
TrEMBL | A0A2I4KKZ5 | 0.0 | A0A2I4KKZ5_POPTR; WRKY family protein | ||||
STRING | POPTR_0001s37260.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3946 | 34 | 63 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26640.2 | 0.0 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.011G087900.1 |
Entrez Gene | 7483622 |