PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.011G083100.1
Common NamePOPTR_0011s02350g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TCP
Protein Properties Length: 479aa    MW: 51654.4 Da    PI: 7.9687
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.011G083100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP125.27.3e-39882402134
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............ssssaseceaes 77 
                          g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a+ ai el+++               +          s
  Potri.011G083100.1  88 SGGKDRHSKVWTSKGLRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAVEWLIKAAQDAINELPSLnhsfpdtpkqlsdekK---------TS 169
                         689*************************************************************7766443333322221.........11 PP

                 TCP  78 ssssasnsssg...................kaaksaakskksqksaasalnlak.esrakarararertrekmrikn 134
                         +s +      +                    + +++a+s+ s++s+ s l+l++  sr kar+rarert++++ ++n
  Potri.011G083100.1 170 DSTE------QgfdsadveledpnfrqnqnLSLSKSACSSTSETSKGSGLSLSRsVSRDKARERARERTAKEKEKEN 240
                         1111......112223355555555555557778888999999999999*****9************9999888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.4E-4289238IPR005333Transcription factor, TCP
PROSITE profilePS5136931.9190148IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.251218236IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MEAEEIRRQP CKFSRVGNGI NDASRIAQKG NGTDHQYPDD EEDGELKRTN SNNGAGCGGG  60
GIDAAGGTFN GLRAWHHSSR IIRVSRASGG KDRHSKVWTS KGLRDRRVRL SVSTAIQFYD  120
LQDRLGYDQP SKAVEWLIKA AQDAINELPS LNHSFPDTPK QLSDEKKTSD STEQGFDSAD  180
VELEDPNFRQ NQNLSLSKSA CSSTSETSKG SGLSLSRSVS RDKARERARE RTAKEKEKEN  240
DSRIAHHHNI NPISQNSTFT ELLTGGIGSV RNNNSSNNNN NSTASPTGSD ANNLFQKAAA  300
ARQWPSSPMD CFGSGLLGPS SSRSTHHSSG FPGQIQLGNS IPQAMTMSIP PFCVSGENHQ  360
EHLQHFPFVS DHLIPVAATT QPPASSGDYN LNFTISSGLA AGYHRGTLQS NSSSPSLLPH  420
LQRFSTSSTI DGSTTNVPFF IGAAAPQAME NHHQFPPGLQ LCYGDGTRHS DQKGKGKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A8e-2595149155Putative transcription factor PCF6
5zkt_B8e-2595149155Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.011G083100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024437159.10.0transcription factor TCP2
RefseqXP_024437160.10.0transcription factor TCP2
TrEMBLA0A2K1YHA50.0A0A2K1YHA5_POPTR; Uncharacterized protein
STRINGPOPTR_0011s02350.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40193156
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.22e-42TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2