PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.011G083100.1 | ||||||||
Common Name | POPTR_0011s02350g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | TCP | ||||||||
Protein Properties | Length: 479aa MW: 51654.4 Da PI: 7.9687 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 125.2 | 7.3e-39 | 88 | 240 | 2 | 134 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............ssssaseceaes 77 g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a+ ai el+++ + s Potri.011G083100.1 88 SGGKDRHSKVWTSKGLRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAVEWLIKAAQDAINELPSLnhsfpdtpkqlsdekK---------TS 169 689*************************************************************7766443333322221.........11 PP TCP 78 ssssasnsssg...................kaaksaakskksqksaasalnlak.esrakarararertrekmrikn 134 +s + + + +++a+s+ s++s+ s l+l++ sr kar+rarert++++ ++n Potri.011G083100.1 170 DSTE------QgfdsadveledpnfrqnqnLSLSKSACSSTSETSKGSGLSLSRsVSRDKARERARERTAKEKEKEN 240 1111......112223355555555555557778888999999999999*****9************9999888776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.4E-42 | 89 | 238 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.91 | 90 | 148 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 10.251 | 218 | 236 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 479 aa Download sequence Send to blast |
MEAEEIRRQP CKFSRVGNGI NDASRIAQKG NGTDHQYPDD EEDGELKRTN SNNGAGCGGG 60 GIDAAGGTFN GLRAWHHSSR IIRVSRASGG KDRHSKVWTS KGLRDRRVRL SVSTAIQFYD 120 LQDRLGYDQP SKAVEWLIKA AQDAINELPS LNHSFPDTPK QLSDEKKTSD STEQGFDSAD 180 VELEDPNFRQ NQNLSLSKSA CSSTSETSKG SGLSLSRSVS RDKARERARE RTAKEKEKEN 240 DSRIAHHHNI NPISQNSTFT ELLTGGIGSV RNNNSSNNNN NSTASPTGSD ANNLFQKAAA 300 ARQWPSSPMD CFGSGLLGPS SSRSTHHSSG FPGQIQLGNS IPQAMTMSIP PFCVSGENHQ 360 EHLQHFPFVS DHLIPVAATT QPPASSGDYN LNFTISSGLA AGYHRGTLQS NSSSPSLLPH 420 LQRFSTSSTI DGSTTNVPFF IGAAAPQAME NHHQFPPGLQ LCYGDGTRHS DQKGKGKN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 8e-25 | 95 | 149 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 8e-25 | 95 | 149 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.011G083100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024437159.1 | 0.0 | transcription factor TCP2 | ||||
Refseq | XP_024437160.1 | 0.0 | transcription factor TCP2 | ||||
TrEMBL | A0A2K1YHA5 | 0.0 | A0A2K1YHA5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0011s02350.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4019 | 31 | 56 | Representative plant | OGRP180 | 15 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18390.2 | 2e-42 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Potri.011G083100.1 |
Entrez Gene | 7497052 |