PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.011G079300.1
Common NamePOPTR_0011s02790g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 307aa    MW: 33936.8 Da    PI: 7.8646
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.011G079300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.85.4e-34169226259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dgy+WrKYGqK v++s++prsYYrCt+++C+vkk+vers +dp++v++tYeg+Hnh+
  Potri.011G079300.1 169 EDGYRWRKYGQKAVRNSPYPRSYYRCTTQKCTVKKRVERSFQDPSIVITTYEGQHNHP 226
                         8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.7E-35153228IPR003657WRKY domain
SuperFamilySSF1182901.7E-29160228IPR003657WRKY domain
PROSITE profilePS5081132.535163228IPR003657WRKY domain
SMARTSM007743.2E-39168227IPR003657WRKY domain
PfamPF031062.8E-26169226IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MSNEHRDLYC HTPFQEDHLG VKPLSILDSS TYNSPGQGFD PSPYMSFSEC LHGSLDFNSL  60
AKAFGLSPSS SEVFSSIEGN SKPMEAGVLG CGNSTDQIPA TPNSSLSFSS SEAGGDEDSG  120
KTKKETQPSR PEDGGECSDK KDKAKKKAEQ RKKEPRFAFM TKSEVDHLED GYRWRKYGQK  180
AVRNSPYPRS YYRCTTQKCT VKKRVERSFQ DPSIVITTYE GQHNHPIPTT IRGSASAMFS  240
HSMLTPAPLA TGPRRFPAHL QGYNLVQMPA ATSNKNLGEY PQNVNQVPDY GLLQDIVPSM  300
FFRQEP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-28158228777Probable WRKY transcription factor 4
2lex_A1e-28158228777Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140152KDKAKKKAEQRKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00440DAPTransfer from AT4G18170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.011G079300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024436877.10.0probable WRKY transcription factor 28
SwissprotQ8VWJ22e-74WRK28_ARATH; WRKY transcription factor 28
TrEMBLA0A2K1YH470.0A0A2K1YH47_POPTR; Uncharacterized protein
STRINGPOPTR_0011s02790.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22313483
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.14e-60WRKY DNA-binding protein 71
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kim SH, et al.
    Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis.
    Mol. Cells, 2014. 37(11): p. 833-40
    [PMID:25358503]
  4. Zhao L, et al.
    KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535
    [PMID:29288215]