PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.011G071800.3 | ||||||||
Common Name | POPTR_0011s06800g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | BES1 | ||||||||
Protein Properties | Length: 255aa MW: 26381.9 Da PI: 4.923 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 26.7 | 1.8e-08 | 1 | 69 | 79 | 149 |
DUF822 79 aeaagssasaspesslqsslkssalaspvesysaspksssfpspssldsislasa......asllpvlsvlslvsss 149 ++++g sasasp+ss++ +sp++sy++sp+sssfpsp+s+ + + + +sl+p+l++ls+ sss Potri.011G071800.3 1 MDIIGGSASASPCSSYH--------QSPCASYNPSPASSSFPSPVSSRYAANGNGnvdadaNSLIPWLRNLSSGSSS 69 578999*********99........9******************998877665557889999*********997776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 3.9E-10 | 2 | 64 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MDIIGGSASA SPCSSYHQSP CASYNPSPAS SSFPSPVSSR YAANGNGNVD ADANSLIPWL 60 RNLSSGSSSA SPKHPNHLFI HTGSISAPVT PPLSSPTART PRTRNDWDDP AAGQSWMGQN 120 YSFLPSSMPS STPPSPGRQV LPDSGWLAGI QIPQSGPSSP TFSLVSRNPF GFKEEALSGA 180 GSRMWTPGQS GTCSPAVPAG IDQTADVPMA DSMAAEFAFG SNTAGLVKPW EGERIHEECV 240 SDDLELTLGN SSTR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.011G071800.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU823603 | 0.0 | EU823603.1 Populus tremula isolate swl195-31 brassinosteroid signaling positive regulator-related protein gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024467344.1 | 0.0 | BES1/BZR1 homolog protein 4 isoform X1 | ||||
Refseq | XP_024467345.1 | 0.0 | BES1/BZR1 homolog protein 4 isoform X2 | ||||
Swissprot | Q9ZV88 | 4e-96 | BEH4_ARATH; BES1/BZR1 homolog protein 4 | ||||
TrEMBL | A0A2K1YGT6 | 0.0 | A0A2K1YGT6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0011s06800.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78700.1 | 3e-75 | BES1/BZR1 homolog 4 |
Link Out ? help Back to Top | |
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Phytozome | Potri.011G071800.3 |
Entrez Gene | 18103183 |