PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.011G070100.1
Common NamePOPTR_0011s06990g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 269aa    MW: 30051.1 Da    PI: 6.1296
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.011G070100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY962.5e-3075133259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp++++itY+ eHnh+
  Potri.011G070100.1  75 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSKVDPTMLVITYSCEHNHP 133
                         69*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081131.84669135IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.2E-3170135IPR003657WRKY domain
SuperFamilySSF1182907.72E-2671135IPR003657WRKY domain
SMARTSM007744.7E-3574134IPR003657WRKY domain
PfamPF031069.3E-2676133IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MDRRFNINPL ITEQEENDNS AQESGPESPP SNDMKMPSTS SPKRSKKAMQ KRVVSVPIKD  60
LEGSRLKGEN ASPPSDSWAW RKYGQKPIKG SPYPRGYYRC SSSKGCPARK QVERSKVDPT  120
MLVITYSCEH NHPWPPPSRS HNHHKNHHNS SSPKHNTTTK PEVSTTHPDN PEPEHEEKFT  180
DLGNDGSLIS TTTTSDEFSW FGEIETTSST ILETPFFAEG EADADMASMF FPMRDEDESL  240
FADLGELPEC SSVFRHQRSG VGPQVQIC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-2151135679Disease resistance protein RRS1
5w3x_D2e-2151135679Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00167DAPTransfer from AT1G29280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.011G070100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3774280.0GQ377428.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 8 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002317397.10.0probable WRKY transcription factor 65
RefseqXP_024436630.10.0probable WRKY transcription factor 65
SwissprotQ9LP564e-89WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBLB9I1H90.0B9I1H9_POPTR; Uncharacterized protein
STRINGPOPTR_0011s06990.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27703475
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.12e-79WRKY DNA-binding protein 65
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Singh V,Roy S,Singh D,Nandi AK
    Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes.
    J. Biosci., 2014. 39(1): p. 119-26
    [PMID:24499796]