PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.011G065500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | bHLH | ||||||||
Protein Properties | Length: 225aa MW: 24786.6 Da PI: 10.1271 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.9 | 5.5e-11 | 39 | 80 | 3 | 49 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAve 49 ++h+e+ErrRR+riN +++Lr l+P +K++Ka+ L ++ Potri.011G065500.1 39 KSHSEAERRRRERINAHLATLRGLVPCT-----EKMDKATLLAAVIS 80 58*************************8.....7*****99988776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.78 | 36 | 85 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.72E-12 | 39 | 87 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.0E-9 | 39 | 80 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.0E-12 | 40 | 87 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.9E-9 | 42 | 91 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 4.41E-4 | 120 | 188 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
RTMVSQTLML DAEKGELLKA PARIGKMGIS EAKAFAALKS HSEAERRRRE RINAHLATLR 60 GLVPCTEKMD KATLLAAVIS QVKEHKKNAL EACKGLLVPM DDDEVKVETY FDGTLHFKAS 120 ICCDYRPELL SDLRNAIDAL PLKTVSAEIS TLGSRLKNEF VLTNRRNKNA LDDAGAIQLL 180 TNSIHQTLTS VMEKGSASPK YSPRTKLPNK RRRVTFFDSS SSSS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 44 | 49 | ERRRRE |
2 | 209 | 213 | KRRRV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.011G065500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC214284 | 1e-72 | AC214284.1 Populus trichocarpa clone POP076-F15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002316828.2 | 1e-163 | transcription factor bHLH30 | ||||
TrEMBL | A0A2K1YGE9 | 1e-161 | A0A2K1YGE9_POPTR; Uncharacterized protein | ||||
STRING | XP_002522566.1 | 1e-112 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8986 | 31 | 43 | Representative plant | OGRP377 | 15 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68810.1 | 8e-31 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.011G065500.1 |