PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.011G061800.1 | ||||||||
Common Name | POPTR_0011s06020g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 282aa MW: 31465.1 Da PI: 4.6904 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61 | 2.7e-19 | 122 | 172 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrd k +r++lg+f taeeAa a+++a+++++g Potri.011G061800.1 122 HYRGVRRRP-WGKYAAEIRDS---SrKGARVWLGTFKTAEEAALAYDKAALRIRG 172 7********.**********3...2234*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.6E-31 | 121 | 181 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.8E-37 | 122 | 186 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-23 | 122 | 182 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.82E-30 | 122 | 180 | No hit | No description |
Pfam | PF00847 | 4.7E-14 | 122 | 172 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.472 | 122 | 180 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.0E-11 | 123 | 134 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.0E-11 | 146 | 162 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MAIQSDHLAT SEGILENVWA SYIGEHRGDK VTSNDEQEEI KSSQELPSLD SRDGSMEVLE 60 RLPSLGRWIS MGTESWEGLL DGIIPEINYK ELTSNDRAEN KGPSSLSSKQ NTVKTEKVTT 120 RHYRGVRRRP WGKYAAEIRD SSRKGARVWL GTFKTAEEAA LAYDKAALRI RGPKTNLNFP 180 LETVAKAMGI DCSKNDYSVS STTTSQGYDT SCTILGSVDK VSVIPRRRVS RDWEVNDDLI 240 IMEQPGIQRM ACVEELSVDD FDVVEFQDLG SDYLDSMFSS F* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-28 | 121 | 181 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.011G061800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC216917 | 0.0 | AC216917.1 Populus trichocarpa clone POP066-L06, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006377449.2 | 0.0 | ethylene-responsive transcription factor ERF091, partial | ||||
TrEMBL | U5FZ65 | 0.0 | U5FZ65_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0011s06020.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9547 | 31 | 42 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18450.1 | 2e-40 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.011G061800.1 |
Entrez Gene | 18103102 |