PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.011G060000.1

Common Name

POPTR_0011s05890g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

VOZ

Protein Properties

Length: 490aa MW: 54567.2 Da PI: 5.7822

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.011G060000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	429.8	4.1e-132	207	424	1	217
VOZ 1 pppsaflgpkcalwdctrpaqg.sewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspw 90 pppsaflgpkcalwdc+rpaqg +w+qdycssfh ++alneg+pg++p+lrp+gi+lkdgllf++lsakv+gk+vgipecegaatakspw Potri.011G060000.1 207 PPPSAFLGPKCALWDCPRPAQGgLDWYQDYCSSFHHAVALNEGPPGLSPILRPGGIGLKDGLLFSSLSAKVEGKDVGIPECEGAATAKSPW 297 89****************9648*************************************************************** PP VOZ 91 naaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldala 181 na+elfdls+l+getirewlffdkprrafesgnrkqrslpdy+grgwhesrkqvm+efgglkrsyymdpqp+++fewhlyeyein++da+a Potri.011G060000.1 298 NAPELFDLSVLKGETIREWLFFDKPRRAFESGNRKQRSLPDYTGRGWHESRKQVMNEFGGLKRSYYMDPQPLNNFEWHLYEYEINNCDACA 388 *************************************************************************************** PP VOZ 182 lyrlelklvdekksakgkvskdsladlqkklgrlta 217 lyrlelk vd+kksakgk++++s++dlqk++grlta Potri.011G060000.1 389 LYRLELKAVDGKKSAKGKLANESVVDLQKQMGRLTA 424 ********************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 490 aa Download sequence Send to blast
MGKGSKINCK SASHKLFKDK AKNRVDDLQG MFLDLQFARK ESRTVDVAVL EEQVHQMLRE 60 WKAELNEPSP ASSLQQGGSL GSFSTDICRL LQLCEEEDDA TSALAAPKPE PNDQSLQVGN 120 NVVFQEGYGV NHDQQEHVFP FVDQCKDSPS GVRSMVINNM EGVAQLEYHH FDLPQNSEQN 180 FYTGFNDMDL GEDATHLVSS YLPSMCPPPS AFLGPKCALW DCPRPAQGGL DWYQDYCSSF 240 HHAVALNEGP PGLSPILRPG GIGLKDGLLF SSLSAKVEGK DVGIPECEGA ATAKSPWNAP 300 ELFDLSVLKG ETIREWLFFD KPRRAFESGN RKQRSLPDYT GRGWHESRKQ VMNEFGGLKR 360 SYYMDPQPLN NFEWHLYEYE INNCDACALY RLELKAVDGK KSAKGKLANE SVVDLQKQMG 420 RLTAEFPSDH KRAVKGRTKV NAKAGVRNVY SGATQAAPTN EAYDYGPGPH YDYLVENLGD 480 YYLTQFKKP*

Sequence ? help Back to Top

Protein Sequence Length: 490 aa Download sequence Send to blast

MGKGSKINCK SASHKLFKDK AKNRVDDLQG MFLDLQFARK ESRTVDVAVL EEQVHQMLRE  60
WKAELNEPSP ASSLQQGGSL GSFSTDICRL LQLCEEEDDA TSALAAPKPE PNDQSLQVGN  120
NVVFQEGYGV NHDQQEHVFP FVDQCKDSPS GVRSMVINNM EGVAQLEYHH FDLPQNSEQN  180
FYTGFNDMDL GEDATHLVSS YLPSMCPPPS AFLGPKCALW DCPRPAQGGL DWYQDYCSSF  240
HHAVALNEGP PGLSPILRPG GIGLKDGLLF SSLSAKVEGK DVGIPECEGA ATAKSPWNAP  300
ELFDLSVLKG ETIREWLFFD KPRRAFESGN RKQRSLPDYT GRGWHESRKQ VMNEFGGLKR  360
SYYMDPQPLN NFEWHLYEYE INNCDACALY RLELKAVDGK KSAKGKLANE SVVDLQKQMG  420
RLTAEFPSDH KRAVKGRTKV NAKAGVRNVY SGATQAAPTN EAYDYGPGPH YDYLVENLGD  480
YYLTQFKKP*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. Expressed in the vascular bundles of various tissues, specifically in the phloem. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.011G060000.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006377435.1	0.0	transcription factor VOZ1 isoform X1
Refseq	XP_024437335.1	0.0	transcription factor VOZ1 isoform X1
Swissprot	Q9SGQ0	0.0	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	B9N9L2	0.0	B9N9L2_POPTR; Uncharacterized protein
STRING	POPTR_0011s05890.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1498	34	94
Representative plant	OGRP2327	13	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	0.0	vascular plant one zinc finger protein

Link Out ? help Back to Top
Phytozome	Potri.011G060000.1
Entrez Gene	18103089

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]