PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.011G058600.1
Common NamePOPTR_0011s05760g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 337aa    MW: 38054.1 Da    PI: 8.5435
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.011G058600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.66.1e-5061331128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         l pGfrFhPtd+el+ +yL+kkv++++le+  +i++vdiyk++Pw+Lp k+  +e+ew+fFs+rd+ky++g r+nra+ sgyWkatg+dk+
  Potri.011G058600.1   6 LLPGFRFHPTDQELIIHYLRKKVSSSNLEV-VIIADVDIYKFNPWELPGKALFGESEWFFFSPRDRKYPNGARPNRAAGSGYWKATGTDKP 95 
                         579*************************99.77***************7777899************************************ PP

                 NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +l++ +++  g+kk Lvfykgr pkg kt+W+m eyrl
  Potri.011G058600.1  96 ILTSnGSQCLGVKKALVFYKGRPPKGIKTSWLMLEYRL 133
                         **99556669**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-613160IPR003441NAC domain
PROSITE profilePS5100558.5046160IPR003441NAC domain
PfamPF023651.8E-248133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MCSPELLPGF RFHPTDQELI IHYLRKKVSS SNLEVVIIAD VDIYKFNPWE LPGKALFGES  60
EWFFFSPRDR KYPNGARPNR AAGSGYWKAT GTDKPILTSN GSQCLGVKKA LVFYKGRPPK  120
GIKTSWLMLE YRLLDDTHHL HRLRGSMRLD DWVLCRVRQK SNTRPQNGDD HRSNFSSFSP  180
FTSLRCLQGQ EIFKKGNTLK DYYYDLQPCL MAPAESEEAA EQGQVEFQEA SPEYTISGSD  240
SSSHPTMVST VKEKLEYIKK ILSIGALEEL VPTTPKKRLH VSSSNNAENA YIFDELPSPP  300
KKRLHIFSSN KAENECIFEV SSPTLSASSQ QSFQGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-66616317168NO APICAL MERISTEM PROTEIN
1ut4_B1e-66616317168NO APICAL MERISTEM PROTEIN
1ut7_A1e-66616317168NO APICAL MERISTEM PROTEIN
1ut7_B1e-66616317168NO APICAL MERISTEM PROTEIN
3swm_A1e-66616320171NAC domain-containing protein 19
3swm_B1e-66616320171NAC domain-containing protein 19
3swm_C1e-66616320171NAC domain-containing protein 19
3swm_D1e-66616320171NAC domain-containing protein 19
3swp_A1e-66616320171NAC domain-containing protein 19
3swp_B1e-66616320171NAC domain-containing protein 19
3swp_C1e-66616320171NAC domain-containing protein 19
3swp_D1e-66616320171NAC domain-containing protein 19
4dul_A1e-66616317168NAC domain-containing protein 19
4dul_B1e-66616317168NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Increased expression during grain maturation and senescence. Not induced during flower development. {ECO:0000269|PubMed:17124321, ECO:0000269|PubMed:22278768}.
UniprotDEVELOPMENTAL STAGE: Increased expression during grain maturation. {ECO:0000269|PubMed:17124321}.
UniprotTISSUE SPECIFICITY: Expressed in flag leaves, green spikes and peduncles. {ECO:0000269|PubMed:17124321}.
UniprotTISSUE SPECIFICITY: Highest expression in flag leaves. Expressed in green spikes, peduncles and stamens. {ECO:0000269|PubMed:17124321, ECO:0000269|PubMed:22278768}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene coding for a functional protein (NAM-A1) and one extra pseudogene (NAM-B1) (PubMed:17124321). Plays a weaker role in terminal senescence than NAM-A1. {ECO:0000269|PubMed:17124321, ECO:0000269|PubMed:22278768}.
UniProtTranscription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene coding for a functional protein (NAM-B2) and one extra pseudogene (NAM-B1) (PubMed:17124321). {ECO:0000269|PubMed:17124321, ECO:0000269|PubMed:22278768}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.011G058600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1840830.0AC184083.2 Populus trichocarpa clone Pop1-56J5, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002317321.30.0NAC transcription factor NAM-B1
SwissprotA0SPJ35e-76NAMA1_TRITD; NAC transcription factor NAM-A1
SwissprotA0SPJ63e-76NAMB2_TRITD; NAC transcription factor NAM-B2
TrEMBLB9I1460.0B9I146_POPTR; Uncharacterized protein
STRINGPOPTR_0011s05760.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1781747
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.13e-73NAC domain containing protein 2
Publications ? help Back to Top
  1. Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J
    A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat.
    Science, 2006. 314(5803): p. 1298-301
    [PMID:17124321]