PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.011G058400.2

Common Name

POPTR_0011s05740g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NAC

Protein Properties

Length: 311aa MW: 35206.3 Da PI: 7.1417

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.011G058400.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	107.9	1.2e-33	61	201	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.... 79 lp+G++F+Ptd+e++ +L++kv ++k ++++ i+ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r+++ Potri.011G058400.2 61 LPAGVKFDPTDQEIL-GHLEAKVLSDKrklhplIDEFIPsIEGEnGICYTHPENLP-GVSNDGQIRHFFHRPSKAYTTGTRKRRKVHtded 149 799*********9.789999988885665543333333665557******.566667778**************7444465 PP NAM 80 ..sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g ++g kk+Lv+y gr++k+ekt+Wvmh+y+l Potri.011G058400.2 150 gsETRWHKTGKTRQVFA-SGIVKGFKKILVLYtnYGRQRKPEKTNWVMHQYHL 201 55788********.999*******66589************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.42E-38	54	220	IPR003441	NAC domain
PROSITE profile	PS51005	33.784	61	220	IPR003441	NAC domain
Pfam	PF02365	2.2E-15	62	201	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MTWCSNNSVY ERAIQLATSS SKEDVFVEAE TNEIRRITCP SCGHNFEFQD QGGIIHDLPG 60 LPAGVKFDPT DQEILGHLEA KVLSDKRKLH PLIDEFIPSI EGENGICYTH PENLPGVSND 120 GQIRHFFHRP SKAYTTGTRK RRKVHTDEDG SETRWHKTGK TRQVFASGIV KGFKKILVLY 180 TNYGRQRKPE KTNWVMHQYH LGDNEEEKDG ELVVSKVFYQ TQPRQCSSSI KDSLDNKSSN 240 QSDLVDSHPL AKNSTDLLEF YNPSYISYDQ GNYSSEIPPQ FLPNLVVQGD GSPFTRLAAE 300 TSKGKLQRKW *

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in protoxylem and elongating interfascicular fiber cells of elongating internodes, developing metaxylem cells and interfascicular fibers of non-elongating internodes and developing secondary xylem of roots. {ECO:0000269\|PubMed:18952777}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.011G058400.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP770009	0.0	KP770009.1 UNVERIFIED: Populus tomentosa MYB transcription factor R2R3 type-like (Potri.011G058400) mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024467565.1	0.0	NAC domain-containing protein 73
Swissprot	O49459	1e-118	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A3N7H7P6	0.0	A0A3N7H7P6_POPTR; Uncharacterized protein
STRING	POPTR_0011s05740.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-120	NAC domain containing protein 73

Link Out ? help Back to Top
Phytozome	Potri.011G058400.2
Entrez Gene	18103074

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]