PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.011G058400.1
Common NamePOPTR_0011s05740g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 360aa    MW: 41152.3 Da    PI: 6.9545
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.011G058400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM107.41.7e-331102501128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.... 79 
                         lp+G++F+Ptd+e++  +L++kv ++k      ++++   i+   +i++++P++Lp  v+++ +  +fF++ +k+y+tg+rk+r+++    
  Potri.011G058400.1 110 LPAGVKFDPTDQEIL-GHLEAKVLSDKrklhplIDEFIPsIEGEnGICYTHPENLP-GVSNDGQIRHFFHRPSKAYTTGTRKRRKVHtded 198
                         799***********9.789999988885665543333333665557**********.566667778******************7444465 PP

                 NAM  80 ..sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                           + +W++tgk+++v++ +g ++g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  Potri.011G058400.1 199 gsETRWHKTGKTRQVFA-SGIVKGFKKILVLYtnYGRQRKPEKTNWVMHQYHL 250
                         55788************.999***********66589**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-37103269IPR003441NAC domain
PROSITE profilePS5100533.784110269IPR003441NAC domain
PfamPF023653.1E-15111250IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MILFFFSFYV FILVALYFIF FIFFGRSELE AETTGKIPLW NENKRNTIEM TWCSNNSVYE  60
RAIQLATSSS KEDVFVEAET NEIRRITCPS CGHNFEFQDQ GGIIHDLPGL PAGVKFDPTD  120
QEILGHLEAK VLSDKRKLHP LIDEFIPSIE GENGICYTHP ENLPGVSNDG QIRHFFHRPS  180
KAYTTGTRKR RKVHTDEDGS ETRWHKTGKT RQVFASGIVK GFKKILVLYT NYGRQRKPEK  240
TNWVMHQYHL GDNEEEKDGE LVVSKVFYQT QPRQCSSSIK DSLDNKSSNQ SDLVDSHPLA  300
KNSTDLLEFY NPSYISYDQG NYSSEIPPQF LPNLVVQGDG SPFTRLAAET SKGKLQRKW*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in protoxylem and elongating interfascicular fiber cells of elongating internodes, developing metaxylem cells and interfascicular fibers of non-elongating internodes and developing secondary xylem of roots. {ECO:0000269|PubMed:18952777}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.011G058400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7700090.0KP770009.1 UNVERIFIED: Populus tomentosa MYB transcription factor R2R3 type-like (Potri.011G058400) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024467565.10.0NAC domain-containing protein 73
SwissprotO494591e-117NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A2K1YG640.0A0A2K1YG64_POPTR; Uncharacterized protein
STRINGPOPTR_0011s05740.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122834108
Representative plantOGRP5251585
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-120NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]