PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.011G057700.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | HB-other | ||||||||
Protein Properties | Length: 251aa MW: 28413.2 Da PI: 7.2203 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63 | 4.3e-20 | 28 | 83 | 2 | 57 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ ql++Le++++ + yps e+r+eL++klgL++rq ++WF+ rR k++k Potri.011G057700.4 28 PKRQMKTPFQLQTLENAYATDTYPSDEMRAELSEKLGLSDRQLQMWFCHRRLKDRK 83 69****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-19 | 7 | 84 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.97E-18 | 15 | 85 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.086 | 24 | 84 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.3E-19 | 26 | 88 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 9.5E-18 | 28 | 83 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.25E-16 | 29 | 85 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MEEANSEGEN HSKSKSNAMN SNEGQSKPKR QMKTPFQLQT LENAYATDTY PSDEMRAELS 60 EKLGLSDRQL QMWFCHRRLK DRKENLVKHR KAAPLPGSPL EDMRIVRADS GSDYGSGSVS 120 GSSPLSESRK VVLDDGHKVR RHYESSPRSV TELRAIACVE AQLGEPLRED GPILGMEFDP 180 LPPDAFGEPI AAITEQPKRM GYSYEDKVYE RRDAKSSKVV SQIHHIFLLF LLCTLHVQCW 240 LRFFCISWLL * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 76 | 83 | RRLKDRKE |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in growing tissues such as inflorescence and flower meristems, young leaves and floral organs. Expressed in roots, rosette and cauline leaves, stems, flowers, inflorescences and siliques. {ECO:0000269|PubMed:22694359}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269|PubMed:22694359}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.011G057700.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024436990.1 | 1e-145 | homeobox-DDT domain protein RLT1 isoform X2 | ||||
Refseq | XP_024436991.1 | 1e-147 | homeobox-DDT domain protein RLT1 isoform X3 | ||||
Swissprot | F4HY56 | 7e-52 | RLT1_ARATH; Homeobox-DDT domain protein RLT1 | ||||
TrEMBL | A0A2K1YG45 | 1e-144 | A0A2K1YG45_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0011s05660.1 | 1e-120 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28420.1 | 7e-48 | homeobox-1 |
Link Out ? help Back to Top | |
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Phytozome | Potri.011G057700.4 |