PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.011G054400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | Dof | ||||||||
Protein Properties | Length: 171aa MW: 19612.4 Da PI: 10.8624 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 32.1 | 2.4e-10 | 61 | 88 | 35 | 62 |
zf-Dof 35 aCrryWtkGGalrnvPvGggrrknkkss 62 +CrryWt GG lrnv v g +r+ k+s+ Potri.011G054400.1 61 SCRRYWTLGGNLRNVSVRGDCRRGKRSK 88 8**********************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 0.01 | 51 | 81 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 7.5E-7 | 61 | 86 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MFVAKSTKDY NFTAMQREIQ QDRGGSEDVK PNERRKLKPA KGYDQQKHYK SATHTRGGAL 60 SCRRYWTLGG NLRNVSVRGD CRRGKRSKRL SLLVLVRINR LSHSYSHNHN LSNITWLPLR 120 SFKFCFEGKR IKEFGLTSSW DVFDGILEDK THPIGPSRNY GLCFNGLMAT * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.011G054400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2K1YFY9 | 1e-124 | A0A2K1YFY9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0011s05420.1 | 2e-92 | (Populus trichocarpa) |
Link Out ? help Back to Top | |
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Phytozome | Potri.011G054400.1 |