PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.011G054300.1 | ||||||||
Common Name | POPTR_0011s05410g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | Dof | ||||||||
Protein Properties | Length: 326aa MW: 35711.2 Da PI: 9.3586 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 120.6 | 5.7e-38 | 29 | 89 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++ +kcprC+s ntkfCyynny+lsqPryfCk+CrryWt GG+lrnvPvGgg+rk k+++ Potri.011G054300.1 29 PQQPQKCPRCESLNTKFCYYNNYNLSQPRYFCKTCRRYWTLGGTLRNVPVGGGCRKGKRAK 89 78999***************************************************99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 3.2E-32 | 31 | 87 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.63 | 33 | 87 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 2.0E-23 | 34 | 87 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 35 | 71 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MQGGSEDVKP NQERRLKSTQ GDDQQQHQPQ QPQKCPRCES LNTKFCYYNN YNLSQPRYFC 60 KTCRRYWTLG GTLRNVPVGG GCRKGKRAKT SSSSSSGENS RLQQQLPQQP HLLQHNFATP 120 QNILATNNSG NLSSPALRNK ESGNLVSPPA PGMSTMGSYF PGGGFFTSLE AIQSLNNNQP 180 PIQSFPLQPL NQPVNLGGVL GETSNLGLLH GFNAVPAFGS QNQQQSQFYH VGYRDTRSIE 240 HSFYPHNQES LIQSSRPATS SHQQQNWHHG FMSNSSPTVS DTALWSTSTS TTIGHTNSNI 300 NPTAGSSPLN PDQWKHDLPG YGPPS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.011G054300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006377380.1 | 0.0 | dof zinc finger protein 1 | ||||
TrEMBL | U5G111 | 0.0 | U5G111_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0011s05410.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4145 | 32 | 58 | Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60850.1 | 1e-32 | OBF binding protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Potri.011G054300.1 |
Entrez Gene | 18103041 |