PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.011G043600.2
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 845aa    MW: 92803.2 Da    PI: 7.9762
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.011G043600.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.91.8e-18292391198
                         EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                         f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d++g++W +++++  +++s++yvl+ G     +  +L++gD+v+F++ + 
  Potri.011G043600.2 292 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLRVQDSKGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAGDIVTFSRLE- 380
                         89**************************555567778***************9989999999***9.********************766. PP

                         SEE..EEEEE- CS
                  B3  88 sefelvvkvfr 98 
                          e++lv+++++
  Potri.011G043600.2 381 PEGKLVMGFRK 391
                         77777777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.0E-30289394IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.01E-19290391IPR015300DNA-binding pseudobarrel domain
CDDcd100171.09E-21290391No hitNo description
PROSITE profilePS5086311.293292393IPR003340B3 DNA binding domain
PfamPF023628.5E-16292391IPR003340B3 DNA binding domain
SMARTSM010197.3E-19292393IPR003340B3 DNA binding domain
PROSITE profilePS5105014.223522572IPR011124Zinc finger, CW-type
PfamPF074961.1E-12527569IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 845 aa     Download sequence    Send to blast
MSSSSSSLAA TSTTATATNN NNNNTSCCSS SSTVLSRKCF NSDCTDFKSR KGWRLRSGDF  60
ADLCDRCASA HEEGRFCETF HSNASGWRSC ESCGKRVHCG CIVSLQAFTL LDAGGIACMA  120
CARKSFVLLR MGMQVQILNL HFMLLQGKEC MMTWHFHAAM LESVVETTGC EFFVAGIIDD  180
EQPQMLSSLR EDISAQQFGI TIPYASPSKL KGQIEGSVNP LLPAPLPLFA KRVHGTLHKG  240
VDSSVDGQIR NGRPRIDARG KSQLLPRYWP RFTDEELQQI SGNPNSVIKP LFEKMLSASD  300
AGRIGRLVLP KKCAEAYFPP ISQPEGLPLR VQDSKGKEWI FQFRFWPNNN SRMYVLEGVT  360
PCIQNMQLQA GDIVTFSRLE PEGKLVMGFR KASSASLSDQ AWNFTWHVFK NLKFMYQSNS  420
AELGPSPWSK VDKSGYIAKE VLEAKSSIKK RKSSTLGSKS KRLRIENEDM IELKLTWEEA  480
QGLLRPAPDH VPSIVVIEGF EFEEYEDAPV LGKPTIFAMD NVGHKIQWVQ CEDCLKWRKL  540
PLNVLLPSKW TCSGNTWDSE RSSCSAAQDL TSEQLENLLP SRNLVTSKRL KAAKKDIDNV  600
EALGGLDTLA NLAILGEGEA LLASSQATTK HPRHRPGCSC IVCIQPPSGK GPKHKQTCTC  660
NVCQTVKRRF KTLMMKREKK QSEKEAETTR KQQESSAEKL LDDDPSPSSN AGSASGSPNK  720
KKAVSEVSDD DPNRMKSSTS PFKGQIDLNI QPEREDELSP GSDSGGMMRM LQDASERYLR  780
MQRFLSSDGD NIPASNHSVS SGGADEKAGS GIMLGGSHQD VSEDHPSAFS LIASESASAS  840
TPAT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A6e-652703952127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.011G043600.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024437475.10.0B3 domain-containing protein Os07g0563300
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A2K1YFG80.0A0A2K1YFG8_POPTR; Uncharacterized protein
STRINGPOPTR_0004s03530.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1