PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.011G040400.1
Common NamePOPTR_0011s04020g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 309aa    MW: 35643.6 Da    PI: 4.6495
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.011G040400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.38.6e-141562148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg W+++Ed+ l  ++k++G  +W+  ++  g+ R++k+c++rw +yl
  Potri.011G040400.1 15 RGTWSADEDQMLRAYIKRYGIWNWNEMPKAAGLSRSGKSCRLRWMNYL 62
                        89******************99************************97 PP
2Myb_DNA-binding52.31.3e-1668113148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg+ ++eE + +++++++lG++ W+tIa++++ gRt++++k++w++yl
  Potri.011G040400.1  68 RGNLSKEEVQTIIKLHEMLGNR-WSTIAAKLP-GRTDNEIKNFWNTYL 113
                         7899******************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.4141062IPR017930Myb domain
SuperFamilySSF466896.88E-2813109IPR009057Homeodomain-like
SMARTSM007178.6E-121464IPR001005SANT/Myb domain
PfamPF002496.5E-121562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-201669IPR009057Homeodomain-like
CDDcd001671.18E-81762No hitNo description
PROSITE profilePS5129423.60663117IPR017930Myb domain
SMARTSM007172.7E-1567115IPR001005SANT/Myb domain
PfamPF002495.0E-1568113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-2470116IPR009057Homeodomain-like
CDDcd001676.82E-1172113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MRSISQKYQN FCLKRGTWSA DEDQMLRAYI KRYGIWNWNE MPKAAGLSRS GKSCRLRWMN  60
YLRPGIKRGN LSKEEVQTII KLHEMLGNRW STIAAKLPGR TDNEIKNFWN TYLRNRFNNN  120
ISNTAVQAPK LQGTSPVNDI NENQHMEENV GSLESFGEPS FWDQPFSMEA QMCKVEDYGE  180
TYTDEMWVQE LLSYPNASHN FECKQRNSSD IDVSLPTSPN ILNSDEYSSN GTLPMSPIIS  240
TDNFSSSSSN PVNDFNENQH MVEIGSLESF GELSLWDHPF SMEAQLCKVE DYGETYTDQM  300
WVQELLYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-24611718128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.011G040400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002317254.20.0transcription factor MYB14
TrEMBLB9HYP40.0B9HYP4_POPTR; Uncharacterized protein
STRINGPOPTR_0011s04020.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15840411
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.12e-50myb domain protein 14