PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.011G040300.1
Common NamePOPTR_0011s04010g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 299aa    MW: 34545.8 Da    PI: 6.5269
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.011G040300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding408.9e-134087148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg W ++Ed++l  ++k++   +W+  +r  g+ R++k+c++rw +yl
  Potri.011G040300.1 40 RGTWDPDEDQKLRAYIKRHSIWNWNEMPRAAGLLRSGKSCRLRWMNYL 87
                        89******************99**********99************97 PP
2Myb_DNA-binding50.74.2e-1693137147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg++++eE + ++++ ++lG++ W+tIa++++ gRt++++k++w+++
  Potri.011G040300.1  93 RGSFSKEEVQTIIKLQEMLGNR-WSTIAAKLP-GRTDNDIKNFWNTH 137
                         899*******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500909.7093587IPR017877Myb-like domain
SuperFamilySSF466892.7E-2538134IPR009057Homeodomain-like
SMARTSM007174.1E-93989IPR001005SANT/Myb domain
PfamPF002492.4E-104087IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-194194IPR009057Homeodomain-like
CDDcd001679.23E-74287No hitNo description
PROSITE profilePS5129423.57288142IPR017930Myb domain
SMARTSM007172.7E-1592140IPR001005SANT/Myb domain
PfamPF002492.0E-1493137IPR001005SANT/Myb domain
CDDcd001673.01E-1095138No hitNo description
Gene3DG3DSA:1.10.10.601.4E-2495141IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MTGAAVWCFK VEDLKSRNRF SRPETMRSIS QKYQNLFLKR GTWDPDEDQK LRAYIKRHSI  60
WNWNEMPRAA GLLRSGKSCR LRWMNYLRPD IKRGSFSKEE VQTIIKLQEM LGNRWSTIAA  120
KLPGRTDNDI KNFWNTHVRN RFNNNISNTT VQAPKLQEIQ TSEEEFKQRK SSAIDVSLPT  180
APKILNSEEY SSKGTLPMLP ILCSDNFSSS SSSPVNDINE NMRMEENDGS FESFAELSLL  240
DQPLSMEAQK CNAEDYGEAY TDEMWVQELL NYPNASHNFD VGQEFWMNCL MQAQLHGN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-22381435109B-MYB
1h8a_C9e-223114218128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.011G040300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002317255.10.0myb-related protein 308
TrEMBLB9HYP50.0B9HYP5_POPTR; Uncharacterized protein
STRINGPOPTR_0011s04010.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15840411
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.12e-50myb domain protein 4