PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.011G040200.1
Common NamePOPTR_0011s04000g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 300aa    MW: 34198.3 Da    PI: 6.6322
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.011G040200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.68e-153986148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+W ++Ed++l  ++ ++G+++W+  ++  g+ R++k+c+ rw +yl
  Potri.011G040200.1 39 RGAWDPDEDQILRAYIMRYGTRNWNEMPKAAGLLRSGKSCRFRWMNYL 86
                        89******************************99************97 PP
2Myb_DNA-binding52.79.5e-1792136147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg++++eE + +++++++lG++ W++Ia++++ gRt++++k++w+++
  Potri.011G040200.1  92 RGNFSKEEVQTIIKLHEMLGNR-WSAIAEKLP-GRTDNDIKNFWNTH 136
                         89********************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.4353486IPR017930Myb domain
SuperFamilySSF466893.48E-2737133IPR009057Homeodomain-like
SMARTSM007172.2E-123888IPR001005SANT/Myb domain
PfamPF002491.0E-133986IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.6E-214093IPR009057Homeodomain-like
CDDcd001675.22E-94186No hitNo description
PROSITE profilePS5129423.51787141IPR017930Myb domain
SMARTSM007175.7E-1791139IPR001005SANT/Myb domain
PfamPF002499.7E-1692136IPR001005SANT/Myb domain
CDDcd001674.90E-1294137No hitNo description
Gene3DG3DSA:1.10.10.602.0E-2594140IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MTHTAVGCFK VKDVESRNGV SRPEMMSISQ KYQNLCLKRG AWDPDEDQIL RAYIMRYGTR  60
NWNEMPKAAG LLRSGKSCRF RWMNYLRPDI KRGNFSKEEV QTIIKLHEML GNRWSAIAEK  120
LPGRTDNDIK NFWNTHWRKS FNNNISNTAV QAPKLEGTQT SEEESKQRKS SNIIDVSFPT  180
APKILNLEDQ YSSKGTLHML PIRSTDNISS SSSSHVNGIN ENKRVEDNVG SLESIGELSS  240
LDQPSSMEAQ MGKVEDYGEA YTDQMWVQEL LDYPNASHNF DAGQEFWMNC LMQTQLHGD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-243013518122MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.011G040200.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024467312.10.0transcription factor MYB14-like
TrEMBLA0A2K1YFA20.0A0A2K1YFA2_POPTR; Uncharacterized protein
STRINGPOPTR_0011s04000.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15840411
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.18e-53myb domain protein 15