PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.011G025000.1 | ||||||||
Common Name | POPTR_0011s00520g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 721aa MW: 78975.5 Da PI: 5.6383 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.8 | 5.1e-20 | 53 | 108 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q++e+e++F+++++p+ ++r+eL+++lgL+ qVk+WFqN+R+++k Potri.011G025000.1 53 KKRYHRHTQRQIQEMEAFFQECPHPDDKQRKELSRELGLDPLQVKFWFQNKRTQMK 108 688999***********************************************998 PP | |||||||
2 | START | 207.3 | 6e-65 | 242 | 461 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS START 1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 e+a +a++el+++a+a+ep+W + e +n++e+l++f+++ + ++ea+r+s+vv+m +++lve+l+d + qW++ + +a Potri.011G025000.1 242 EVAVAAMEELMRMAQAGEPLWIQGEnntEVLNEEEYLRTFTRGIGprplgMRSEASRESAVVIMSHVNLVEILMDAN-QWSTIFCgivsRA 331 68899********************99999************999********************************.******99999** PP EEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEE CS START 80 etlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghsk 163 +tlev+s+g galq+m+ae+q++splvp R+ +fvRy++q+++ +w++vdvS+ds + + + +++++ Sg+li++++ng+s+ Potri.011G025000.1 332 MTLEVLSTGvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKQHTDATWAVVDVSLDSLCP-SL---MSKCRRRSSGCLIQELPNGYSN 418 ***********************************************************9866.44...899999**************** PP EEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 164 vtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 v+wveh+++++r++h+++r+lv+sgla+gak+wv tl+rqce+ Potri.011G025000.1 419 VVWVEHTEVDDRSVHNIYRPLVNSGLAFGAKRWVGTLDRQCER 461 *****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.6E-23 | 34 | 108 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.17E-19 | 36 | 110 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.892 | 50 | 110 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.4E-19 | 51 | 114 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.79E-19 | 53 | 111 | No hit | No description |
Pfam | PF00046 | 1.2E-17 | 53 | 108 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 85 | 108 | IPR017970 | Homeobox, conserved site |
SuperFamily | SSF55961 | 3.57E-32 | 233 | 463 | No hit | No description |
PROSITE profile | PS50848 | 41.878 | 233 | 464 | IPR002913 | START domain |
CDD | cd08875 | 3.50E-121 | 237 | 460 | No hit | No description |
SMART | SM00234 | 2.9E-61 | 242 | 461 | IPR002913 | START domain |
Pfam | PF01852 | 8.5E-54 | 242 | 461 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 8.1E-4 | 339 | 460 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 5.93E-27 | 480 | 712 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 721 aa Download sequence Send to blast |
MFDSHHMLDM TPKSSENDLS KLKDDDYETK SGTETMEAPS GDDQDPSGQR PKKKRYHRHT 60 QRQIQEMEAF FQECPHPDDK QRKELSRELG LDPLQVKFWF QNKRTQMKAQ HERSENSILK 120 AENEKLRMEN NRYKEALSSA SCPNCGGPAA LGEMSFDEQH LRIENARLRE EIDRISGIAA 180 KYVGKPLSSL SNLSHHLPSR SLDLGVSNYG AHSGFVGEMF GATALLGAVT GPTEADKPMI 240 VEVAVAAMEE LMRMAQAGEP LWIQGENNTE VLNEEEYLRT FTRGIGPRPL GMRSEASRES 300 AVVIMSHVNL VEILMDANQW STIFCGIVSR AMTLEVLSTG VAGNYNGALQ VMTAEFQVPS 360 PLVPTRENYF VRYCKQHTDA TWAVVDVSLD SLCPSLMSKC RRRSSGCLIQ ELPNGYSNVV 420 WVEHTEVDDR SVHNIYRPLV NSGLAFGAKR WVGTLDRQCE RLASSMAINI PTGDLCVITT 480 PEGRKSILKL AERMVMSFCT GVGASTAHTW TTLSATGSDD VRVMTRKSMD DPGRPPGIVL 540 SAATSFWIPV PSKKVFDFLK DENHRSEWDI LSNGGQVQEM AHIANGRDPG NCVSLLRVNS 600 TNSSQSNMLI LQESCTDSTG SYVIYAPVDI SAMNIVLSGG DPDYVALLPS GFAILPDGPG 660 YGPAGILDVG SGGSLLTVAF QILVDSVPSV KLSLGSVATV NSLIKCTVER IKAAVMCDNP 720 * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.774 | 0.0 | bud |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Specifically expressed in the layer 1 (L1) of shoot meristems. {ECO:0000269|PubMed:12505995}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.011G025000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU278766 | 1e-150 | GU278766.1 Populus balsamifera isolate POR11 haplotype A L1 specific homeobox gene (ML1) / ovulespecific homeobox protein A20 gene, partial sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024436817.1 | 0.0 | homeobox-leucine zipper protein MERISTEM L1 isoform X1 | ||||
Refseq | XP_024436818.1 | 0.0 | homeobox-leucine zipper protein MERISTEM L1 isoform X1 | ||||
Refseq | XP_024436819.1 | 0.0 | homeobox-leucine zipper protein MERISTEM L1 isoform X1 | ||||
Swissprot | Q93V99 | 0.0 | PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 | ||||
TrEMBL | A0A385JIE6 | 0.0 | A0A385JIE6_POPTO; Protodermal factor 2 | ||||
TrEMBL | B9HZK9 | 0.0 | B9HZK9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0011s00520.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1508 | 34 | 99 | Representative plant | OGRP145 | 15 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G04890.1 | 0.0 | protodermal factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Potri.011G025000.1 |
Entrez Gene | 7485428 |
Publications ? help Back to Top | |||
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