PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.011G023600.2 | ||||||||
Common Name | POPTR_0011s00680g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | G2-like | ||||||||
Protein Properties | Length: 213aa MW: 24219.5 Da PI: 7.0781 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 49.8 | 7.7e-16 | 7 | 36 | 26 | 55 |
G2-like 26 kAtPktilelmkvkgLtlehvkSHLQkYRl 55 +AtPk+i+++m+vkgLtl+h+kSHLQk+Rl Potri.011G023600.2 7 EATPKAIMRIMGVKGLTLYHLKSHLQKFRL 36 69***************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01557 | 4.6E-10 | 7 | 37 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 4.9E-14 | 7 | 37 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.97E-5 | 8 | 37 | IPR009057 | Homeodomain-like |
Pfam | PF14379 | 6.0E-17 | 77 | 122 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MSEPNLEATP KAIMRIMGVK GLTLYHLKSH LQKFRLGKQP QNYLNEQAIR DATGHLKNLQ 60 DAATARIFGD GLNKNIHRNE VLGTQIQAQR TLDEQLKVKH HLQKRIDAQR KYMQTILENA 120 YRTVSAENRL FDDQRVVSEM GNMKEIVSAS NFPPIQDLQT YGDHSHDGFL PTDDSMSSCT 180 IPMISYDNMQ LQHITLAPCL ASEEELHQMS YN* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Specifically expressed in the developing protophloem sieve elements soon after the phloem-specific cell divisions have taken place. Also found in the companion cells and metaphloem sieve elements. May not be necessary for the initial steps of protophloem differentiation. {ECO:0000269|PubMed:14614507, ECO:0000269|PubMed:18523061}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoots and roots, specifically in the developing protophloem sieve elements (PubMed:14614507). Detected in phloem and/or cambium (PubMed:15923329). Expressed in the phloem tissues of various organs, including leaves and cotyledons, during vegetative growth (PubMed:26239308). {ECO:0000269|PubMed:14614507, ECO:0000269|PubMed:15923329, ECO:0000269|PubMed:26239308}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269|PubMed:14614507, ECO:0000269|PubMed:18523061, ECO:0000269|PubMed:25081480, ECO:0000269|PubMed:26239308, ECO:0000305|PubMed:15592750}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.011G023600.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269|PubMed:15592750}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002316598.1 | 1e-152 | myb family transcription factor APL | ||||
Swissprot | Q9SAK5 | 2e-27 | APL_ARATH; Myb family transcription factor APL | ||||
TrEMBL | B9HZJ6 | 1e-151 | B9HZJ6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0011s00680.1 | 1e-152 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79430.2 | 8e-30 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.011G023600.2 |
Entrez Gene | 7484551 |
Publications ? help Back to Top | |||
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