PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.011G007800.2 | ||||||||
Common Name | POPTR_0021s00280g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | WRKY | ||||||||
Protein Properties | Length: 591aa MW: 64185.1 Da PI: 7.1039 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.9 | 1.4e-30 | 334 | 392 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ Potri.011G007800.2 334 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRTILITTYEGNHNHP 392 7*********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.6E-33 | 318 | 394 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-27 | 326 | 394 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.516 | 328 | 394 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-36 | 333 | 393 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.6E-26 | 335 | 392 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 591 aa Download sequence Send to blast |
MDKGWGLTLA SDPVSVFSSN NNNSPVGSFL KIKRDFISDH NMDHSRNNNM FQFPGSLSAG 60 QDEQPPSAAH EVDFFKERID KVGDDDSKTT SVIVKKENSI AELAPRSTRT ALDVNTGLHL 120 LTANSRSDQS TVDDGVSSDV DDKRSKNNEK LAQLQMELQK MNTENQRLKD MLGQVTTSYS 180 ALQMHFAALM QQHQQQNHGK ESNKEQQGKS SEEKKHEDVV VPRQFMDLGP SAETDELSNS 240 SSDERTRSGT PQNHIEVASP KNNGKLPYDQ ENSSFRDGKR IGREESPESE SQAWKVQKTD 300 PASPANKAIE QSTEATMRKA RVSVRARSEA PMITDGCQWR KYGQKMAKGN PCPRAYYRCT 360 MAVGCPVRKQ VQRCAEDRTI LITTYEGNHN HPLPPAAMAM ASTTAAAASM LLSGSMSSAD 420 GIMNPNLLAR AILPAGSSNM ATISASAPFP TVTLDLTHNP NPLQFQRPPP QFQVPFPGQP 480 QNFSSVTTPQ LPQVFGQALY NQSKFSGLQL SQEIGTPQLG HQAQPHLLHS GQQPSLSQDT 540 LSAATAAITA DPNFTAALAA AISSIIGGAN SNTTNNNNNS NATNNTSHRN * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 9e-22 | 320 | 396 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Roots, leaves, shoots, flowers and siliques. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.011G007800.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006389578.1 | 0.0 | probable WRKY transcription factor 31 isoform X3 | ||||
Swissprot | Q9C519 | 1e-160 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | U7E1N5 | 0.0 | U7E1N5_POPTR; WRKY transcription factor 42 family protein | ||||
STRING | POPTR_0021s00280.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 1e-129 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.011G007800.2 |
Entrez Gene | 18111206 |