PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.011G005500.1
Common NamePOPTR_0021s00510g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 123aa    MW: 14095.1 Da    PI: 8.8803
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.011G005500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.63e-10790283
                        EEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEE CS
                  B3  2 fkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFk 83
                        +k+l++sd++++ r+ lp + ++++   +g+  + ++ + +d+  r We+k++ r+ ++    ++++ W ++++++gLk gD v + 
  Potri.011G005500.1  7 EKALSKSDATNN-RMELPMESLRNFpipDGQ--NYFEFVAMDTVDRPWEFKVSTRNEGKYkkPWMSGQWGSYAHEKGLKKGDRVKLI 90
                        578877777766.6********988987555..5689***************87444433459*******************88765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-11690IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.69E-10791IPR015300DNA-binding pseudobarrel domain
CDDcd100177.71E-12885No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MEQVAMEKAL SKSDATNNRM ELPMESLRNF PIPDGQNYFE FVAMDTVDRP WEFKVSTRNE  60
GKYKKPWMSG QWGSYAHEKG LKKGDRVKLI MQVEGNGVRS YRITAERNLA MGIWIPVEDF  120
AS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.011G005500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011008031.15e-76PREDICTED: uncharacterized protein LOC105113526
RefseqXP_011048021.15e-76PREDICTED: uncharacterized protein LOC105142199
TrEMBLU7E1M33e-86U7E1M3_POPTR; Uncharacterized protein
STRINGPOPTR_0021s00510.15e-87(Populus trichocarpa)